Mercurial > repos > jjohnson > samtools_filter
comparison samtools_filter.xml @ 1:f2e4e81f3639
Add tool_dependencies.xml and test-data
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Mon, 01 Apr 2013 10:57:16 -0500 |
| parents | 5dcbce4f5971 |
| children |
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| 0:5dcbce4f5971 | 1:f2e4e81f3639 |
|---|---|
| 1 <tool id="samtools_filter" name="Filter SAM or BAM" version="1.1.0"> | 1 <tool id="samtools_filter" name="Filter SAM or BAM" version="1.1.1"> |
| 2 <description>files on FLAG MAPQ RG LN or by region</description> | 2 <description>files on FLAG MAPQ RG LN or by region</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package">samtools</requirement> | 4 <requirement type="package" version="0.1.18">samtools</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 <!-- | 6 <!-- |
| 7 samtools view [-bchuHS] [-t in.refList] [-o output] [-f reqFlag] [-F skipFlag] [-q minMapQ] [-l library] [-r readGroup] [-R rgFile] <in.bam>|<in.sam> [region1 [...]] | 7 samtools view [-bchuHS] [-t in.refList] [-o output] [-f reqFlag] [-F skipFlag] [-q minMapQ] [-l library] [-r readGroup] [-R rgFile] <in.bam>|<in.sam> [region1 [...]] |
| 8 Usage: samtools view [options] <in.bam>|<in.sam> [region1 [...]] | 8 Usage: samtools view [options] <in.bam>|<in.sam> [region1 [...]] |
| 9 | 9 |