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diff snpSift_int.xml @ 5:192a236898f5

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Add test cases for SnpSift
author Jim Johnson <jj@umn.edu>
date Mon, 25 Mar 2013 08:51:33 -0500
parents c07c403fc470
children ec16dae84230
line wrap: on
line diff
--- a/snpSift_int.xml	Wed Mar 20 13:19:14 2013 -0500
+++ b/snpSift_int.xml	Mon Mar 25 08:51:33 2013 -0500
@@ -21,6 +21,20 @@
           <exit_code range=":-1"  level="fatal"   description="Error: Cannot open file" />
           <exit_code range="1:"  level="fatal"   description="Error" />
         </stdio>
+        <tests>
+            <test>
+                <param name="input" ftype="vcf" value="annotate_5.vcf"/>
+                <param name="bed" ftype="bed" value="interval.bed"/>
+                <output name="output">
+                    <assert_contents>
+                        <has_text text="872687" />
+                        <not_has_text text="1195966" />
+                    </assert_contents>
+                </output>
+            </test>
+
+        </tests>
+
 	<help>
 
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