Mercurial > repos > john-mccallum > dnaclust

view count_cluster_size.xml @ 1:8d31c21e4f28 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded fastaselect.xml with trivial but critical fix
author john-mccallum
date Wed, 26 Jun 2013 22:07:53 -0400
parents 84be1fe7e34a
children
line wrap: on
line source

<?xml version="1.0"?>
<tool id="count_clustersize_1" name="count_clustersize">
  <description>Get cluster size  DNAclust output</description>
  <command>awk 'OFS="\t" {print$1, NF}' $inputClusterFile  > $outputfile </command>
  <inputs>

    <param format="tabular" name="inputClusterFile" type="data" label=" Cluster input file from DNAclust"/>
  </inputs>
  <outputs>
     <data format="tabular" name="outputfile" />
  </outputs>

<help>
Returns the number of members in a  cluster by counting columns from DNA clust output 

</help>
</tool>