Mercurial > repos > john-mccallum > dnaclust

changeset 1:8d31c21e4f28 draft

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Uploaded fastaselect.xml with trivial but critical fix
author john-mccallum
date Wed, 26 Jun 2013 22:07:53 -0400
parents 84be1fe7e34a
children 13656c2d7c73
files fastaselect.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/fastaselect.xml	Thu Sep 06 23:05:22 2012 -0400
+++ b/fastaselect.xml	Wed Jun 26 22:07:53 2013 -0400
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <tool id="fastaselect_1" name="fastaselectclust">
   <description>Get Fasta file of cluster centres from DNAclust output</description>
-  <command>cat inputClusterFile | fastaselect  -c  -f  $inputFastaFile > $outputfile </command>
+  <command>cat $inputClusterFile | fastaselect  -c  -f  $inputFastaFile > $outputfile </command>
   <inputs>
     <param format="fasta" name="inputFastaFile" type="data" label="Fasta input file"/>
     <param format="tabular" name="inputClusterFile" type="data" label=" Cluster input file from DNAclust"/>