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author ben-warren
date Mon, 07 Jul 2014 19:28:17 -0400
parents b321e0517be3
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Ipcress result
--------------
 Experiment: k69_93535:SAMTOOLS:SNP:1147
    Primers: A B
     Target: k69_93535:filter(unmasked)
    Matches: 20/20 23/23
    Product: 83 bp (range 50-100)
Result type: forward

...GGACAGGGAAGCTTCATAGG................................. # forward
   ||||||||||||||||||||-->
5'-GGACAGGGAAGCTTCATAGG-3' 3'-CTCCTAAACTAGAAAGTCCAAAC-5' # primers
                           <--|||||||||||||||||||||||
..............................CTCCTAAACTAGAAAGTCCAAAC... # revcomp
--
ipcress: k69_93535:filter(unmasked) k69_93535:SAMTOOLS:SNP:1147 83 A 1088 0 B 1148 0 forward

Ipcress result
--------------
 Experiment: k69_93535:SAMTOOLS:SNP:1147
    Primers: A B
     Target: k69_93535:filter(unmasked)
    Matches: 21/21 21/21
    Product: 86 bp (range 50-100)
Result type: forward

...CTTTGAGTCTGAACGCATTTG............................... # forward
   |||||||||||||||||||||-->
5'-CTTTGAGTCTGAACGCATTTG-3' 3'-CTTCTTTGCCCTCTACTTTGT-5' # primers
                            <--|||||||||||||||||||||
...............................CTTCTTTGCCCTCTACTTTGT... # revcomp
--
ipcress: k69_93535:filter(unmasked) k69_93535:SAMTOOLS:SNP:1147 86 A 1109 0 B 1174 0 forward

Ipcress result
--------------
 Experiment: k69_93535:SAMTOOLS:SNP:1147
    Primers: A B
     Target: k69_93535:filter(unmasked)
    Matches: 20/20 20/20
    Product: 87 bp (range 50-100)
Result type: forward

...TTTGAGTCTGAACGCATTTG.............................. # forward
   ||||||||||||||||||||-->
5'-TTTGAGTCTGAACGCATTTG-3' 3'-CTTTGCCCTCTACTTTGTTC-5' # primers
                           <--||||||||||||||||||||
..............................CTTTGCCCTCTACTTTGTTC... # revcomp
--
ipcress: k69_93535:filter(unmasked) k69_93535:SAMTOOLS:SNP:1147 87 A 1110 0 B 1177 0 forward

Ipcress result
--------------
 Experiment: k69_93535:SAMTOOLS:SNP:1147
    Primers: A B
     Target: k69_93535:filter(unmasked)
    Matches: 21/21 21/21
    Product: 89 bp (range 50-100)
Result type: forward

...CTTTGAGTCTGAACGCATTTG............................... # forward
   |||||||||||||||||||||-->
5'-CTTTGAGTCTGAACGCATTTG-3' 3'-CTTTGCCCTCTACTTTGTTCT-5' # primers
                            <--|||||||||||||||||||||
...............................CTTTGCCCTCTACTTTGTTCT... # revcomp
--
ipcress: k69_93535:filter(unmasked) k69_93535:SAMTOOLS:SNP:1147 89 A 1109 0 B 1177 0 forward

Ipcress result
--------------
 Experiment: k69_93535:SAMTOOLS:SNP:1147
    Primers: A B
     Target: k69_93535:filter(unmasked)
    Matches: 21/21 21/21
    Product: 93 bp (range 50-100)
Result type: forward

...CTTTGAGTCTGAACGCATTTG............................... # forward
   |||||||||||||||||||||-->
5'-CTTTGAGTCTGAACGCATTTG-3' 3'-GCCCTCTACTTTGTTCTAAAC-5' # primers
                            <--|||||||||||||||||||||
...............................GCCCTCTACTTTGTTCTAAAC... # revcomp
--
ipcress: k69_93535:filter(unmasked) k69_93535:SAMTOOLS:SNP:1147 93 A 1109 0 B 1181 0 forward

Ipcress result
--------------
 Experiment: k69_93535:SAMTOOLS:SNP:1336
    Primers: A B
     Target: k69_93535:filter(unmasked)
    Matches: 20/20 22/22
    Product: 82 bp (range 50-100)
Result type: forward

...TTAGAAGGAACGCGAGAAGG................................ # forward
   ||||||||||||||||||||-->
5'-TTAGAAGGAACGCGAGAAGG-3' 3'-GAATGCGGATCAAACCAACAAC-5' # primers
                           <--||||||||||||||||||||||
..............................GAATGCGGATCAAACCAACAAC... # revcomp
--
ipcress: k69_93535:filter(unmasked) k69_93535:SAMTOOLS:SNP:1336 82 A 1297 0 B 1357 0 forward

Ipcress result
--------------
 Experiment: k69_93535:SAMTOOLS:SNP:1336
    Primers: A B
     Target: k69_93535:filter(unmasked)
    Matches: 20/20 20/20
    Product: 85 bp (range 50-100)
Result type: forward

...TTTAGAAGGAACGCGAGAAG.............................. # forward
   ||||||||||||||||||||-->
5'-TTTAGAAGGAACGCGAGAAG-3' 3'-GCGGATCAAACCAACAACAA-5' # primers
                           <--||||||||||||||||||||
..............................GCGGATCAAACCAACAACAA... # revcomp
--
ipcress: k69_93535:filter(unmasked) k69_93535:SAMTOOLS:SNP:1336 85 A 1296 0 B 1361 0 forward

Ipcress result
--------------
 Experiment: k69_93535:SAMTOOLS:SNP:1336
    Primers: A B
     Target: k69_93535:filter(unmasked)
    Matches: 21/21 20/20
    Product: 86 bp (range 50-100)
Result type: forward

...GTTTAGAAGGAACGCGAGAAG.............................. # forward
   |||||||||||||||||||||-->
5'-GTTTAGAAGGAACGCGAGAAG-3' 3'-GCGGATCAAACCAACAACAA-5' # primers
                            <--||||||||||||||||||||
...............................GCGGATCAAACCAACAACAA... # revcomp
--
ipcress: k69_93535:filter(unmasked) k69_93535:SAMTOOLS:SNP:1336 86 A 1295 0 B 1361 0 forward

Ipcress result
--------------
 Experiment: k69_93535:SAMTOOLS:SNP:1336
    Primers: A B
     Target: k69_93535:filter(unmasked)
    Matches: 20/20 22/22
    Product: 87 bp (range 50-100)
Result type: forward

...TTAGAAGGAACGCGAGAAGG................................ # forward
   ||||||||||||||||||||-->
5'-TTAGAAGGAACGCGAGAAGG-3' 3'-CGGATCAAACCAACAACAACTC-5' # primers
                           <--||||||||||||||||||||||
..............................CGGATCAAACCAACAACAACTC... # revcomp
--
ipcress: k69_93535:filter(unmasked) k69_93535:SAMTOOLS:SNP:1336 87 A 1297 0 B 1362 0 forward

Ipcress result
--------------
 Experiment: k69_93535:SAMTOOLS:SNP:1336
    Primers: A B
     Target: k69_93535:filter(unmasked)
    Matches: 20/20 22/22
    Product: 88 bp (range 50-100)
Result type: forward

...TTAGAAGGAACGCGAGAAGG................................ # forward
   ||||||||||||||||||||-->
5'-TTAGAAGGAACGCGAGAAGG-3' 3'-GGATCAAACCAACAACAACTCG-5' # primers
                           <--||||||||||||||||||||||
..............................GGATCAAACCAACAACAACTCG... # revcomp
--
ipcress: k69_93535:filter(unmasked) k69_93535:SAMTOOLS:SNP:1336 88 A 1297 0 B 1363 0 forward

Ipcress result
--------------
 Experiment: k69_98089:SAMTOOLS:SNP:30
    Primers: A B
     Target: k69_98089:filter(unmasked)
    Matches: 25/25 19/19
    Product: 88 bp (range 50-100)
Result type: forward

...CAAATCCAAACATGTTATCTTCTTC............................. # forward
   |||||||||||||||||||||||||-->
5'-CAAATCCAAACATGTTATCTTCTTC-3' 3'-GCGAGTTGCAGTCTAGTAG-5' # primers
                                <--|||||||||||||||||||
...................................GCGAGTTGCAGTCTAGTAG... # revcomp
--
ipcress: k69_98089:filter(unmasked) k69_98089:SAMTOOLS:SNP:30 88 A 1 0 B 70 0 forward

Ipcress result
--------------
 Experiment: k69_98089:SAMTOOLS:SNP:30
    Primers: A B
     Target: k69_98089:filter(unmasked)
    Matches: 25/25 20/20
    Product: 90 bp (range 50-100)
Result type: forward

...CAAATCCAAACATGTTATCTTCTTC.............................. # forward
   |||||||||||||||||||||||||-->
5'-CAAATCCAAACATGTTATCTTCTTC-3' 3'-CGAGTTGCAGTCTAGTAGTT-5' # primers
                                <--||||||||||||||||||||
...................................CGAGTTGCAGTCTAGTAGTT... # revcomp
--
ipcress: k69_98089:filter(unmasked) k69_98089:SAMTOOLS:SNP:30 90 A 1 0 B 71 0 forward

Ipcress result
--------------
 Experiment: k69_98089:SAMTOOLS:SNP:30
    Primers: A B
     Target: k69_98089:filter(unmasked)
    Matches: 25/25 21/21
    Product: 91 bp (range 50-100)
Result type: forward

...CAAATCCAAACATGTTATCTTCTTC............................... # forward
   |||||||||||||||||||||||||-->
5'-CAAATCCAAACATGTTATCTTCTTC-3' 3'-CGAGTTGCAGTCTAGTAGTTG-5' # primers
                                <--|||||||||||||||||||||
...................................CGAGTTGCAGTCTAGTAGTTG... # revcomp
--
ipcress: k69_98089:filter(unmasked) k69_98089:SAMTOOLS:SNP:30 91 A 1 0 B 71 0 forward

Ipcress result
--------------
 Experiment: k69_98089:SAMTOOLS:SNP:30
    Primers: A B
     Target: k69_98089:filter(unmasked)
    Matches: 25/25 20/20
    Product: 96 bp (range 50-100)
Result type: forward

...CAAATCCAAACATGTTATCTTCTTC.............................. # forward
   |||||||||||||||||||||||||-->
5'-CAAATCCAAACATGTTATCTTCTTC-3' 3'-GCAGTCTAGTAGTTGTGCTT-5' # primers
                                <--||||||||||||||||||||
...................................GCAGTCTAGTAGTTGTGCTT... # revcomp
--
ipcress: k69_98089:filter(unmasked) k69_98089:SAMTOOLS:SNP:30 96 A 1 0 B 77 0 forward

Ipcress result
--------------
 Experiment: k69_98089:SAMTOOLS:SNP:30
    Primers: A B
     Target: k69_98089:filter(unmasked)
    Matches: 25/25 21/21
    Product: 97 bp (range 50-100)
Result type: forward

...CAAATCCAAACATGTTATCTTCTTC............................... # forward
   |||||||||||||||||||||||||-->
5'-CAAATCCAAACATGTTATCTTCTTC-3' 3'-GCAGTCTAGTAGTTGTGCTTG-5' # primers
                                <--|||||||||||||||||||||
...................................GCAGTCTAGTAGTTGTGCTTG... # revcomp
--
ipcress: k69_98089:filter(unmasked) k69_98089:SAMTOOLS:SNP:30 97 A 1 0 B 77 0 forward

Ipcress result
--------------
 Experiment: k69_98089:SAMTOOLS:SNP:550
    Primers: A B
     Target: k69_98089:filter(unmasked)
    Matches: 22/22 24/24
    Product: 88 bp (range 50-100)
Result type: forward

...TGAATTGATACTGAAATTCGGG.................................. # forward
   ||||||||||||||||||||||-->
5'-TGAATTGATACTGAAATTCGGG-3' 3'-CTAACACCTTTGAAAGTACATACG-5' # primers
                             <--||||||||||||||||||||||||
................................CTAACACCTTTGAAAGTACATACG... # revcomp
--
ipcress: k69_98089:filter(unmasked) k69_98089:SAMTOOLS:SNP:550 88 A 499 0 B 563 0 forward

Ipcress result
--------------
 Experiment: k69_98089:SAMTOOLS:SNP:550
    Primers: A B
     Target: k69_98089:filter(unmasked)
    Matches: 22/22 24/24
    Product: 77 bp (range 50-100)
Result type: forward

...TGAAATTCGGGAAGACTGAAAG.................................. # forward
   ||||||||||||||||||||||-->
5'-TGAAATTCGGGAAGACTGAAAG-3' 3'-CTAACACCTTTGAAAGTACATACG-5' # primers
                             <--||||||||||||||||||||||||
................................CTAACACCTTTGAAAGTACATACG... # revcomp
--
ipcress: k69_98089:filter(unmasked) k69_98089:SAMTOOLS:SNP:550 77 A 510 0 B 563 0 forward

Ipcress result
--------------
 Experiment: k69_98089:SAMTOOLS:SNP:550
    Primers: A B
     Target: k69_98089:filter(unmasked)
    Matches: 19/19 25/25
    Product: 75 bp (range 50-100)
Result type: forward

...CGGGAAGACTGAAAGAACG................................... # forward
   |||||||||||||||||||-->
5'-CGGGAAGACTGAAAGAACG-3' 3'-CACCTTTGAAAGTACATACGATAGA-5' # primers
                          <--|||||||||||||||||||||||||
.............................CACCTTTGAAAGTACATACGATAGA... # revcomp
--
ipcress: k69_98089:filter(unmasked) k69_98089:SAMTOOLS:SNP:550 75 A 517 0 B 567 0 forward

Ipcress result
--------------
 Experiment: k69_98089:SAMTOOLS:SNP:550
    Primers: A B
     Target: k69_98089:filter(unmasked)
    Matches: 21/21 25/25
    Product: 81 bp (range 50-100)
Result type: forward

...GAAATTCGGGAAGACTGAAAG................................... # forward
   |||||||||||||||||||||-->
5'-GAAATTCGGGAAGACTGAAAG-3' 3'-CACCTTTGAAAGTACATACGATAGA-5' # primers
                            <--|||||||||||||||||||||||||
...............................CACCTTTGAAAGTACATACGATAGA... # revcomp
--
ipcress: k69_98089:filter(unmasked) k69_98089:SAMTOOLS:SNP:550 81 A 511 0 B 567 0 forward

Ipcress result
--------------
 Experiment: k69_98089:SAMTOOLS:SNP:550
    Primers: A B
     Target: k69_98089:filter(unmasked)
    Matches: 22/22 25/25
    Product: 79 bp (range 50-100)
Result type: forward

...AATTCGGGAAGACTGAAAGAAC................................... # forward
   ||||||||||||||||||||||-->
5'-AATTCGGGAAGACTGAAAGAAC-3' 3'-CACCTTTGAAAGTACATACGATAGA-5' # primers
                             <--|||||||||||||||||||||||||
................................CACCTTTGAAAGTACATACGATAGA... # revcomp
--
ipcress: k69_98089:filter(unmasked) k69_98089:SAMTOOLS:SNP:550 79 A 513 0 B 567 0 forward
-- completed ipcress analysis