Mercurial > repos > john-mccallum > ssr_marker_design
comparison MISA/design_MISA.xml @ 0:3006582bfc76
Uploaded V1.0 MISA tools and helper scripts
| author | john-mccallum |
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| date | Wed, 14 Sep 2011 23:57:57 -0400 |
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| -1:000000000000 | 0:3006582bfc76 |
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| 1 <tool id="design_MISA_1" name="MISA Primer Design"> | |
| 2 <description>Design primer sets using MISA output </description> | |
| 3 <command interpreter="bash">design_MISA.sh $inputMisaFile $inputFastaFile $outputfile</command> | |
| 4 <inputs> | |
| 5 <param format="misa" name="inputMisaFile" type="data" label="Misa Source file"/> | |
| 6 <param format="fasta" name="inputFastaFile" type="data" label="Fasta Source file"/> | |
| 7 </inputs> | |
| 8 <outputs> | |
| 9 <data format="tabular" name="outputfile" /> | |
| 10 </outputs> | |
| 11 <help> | |
| 12 | |
| 13 .. class:: infomark | |
| 14 | |
| 15 Design SSR primer sets from MISA output using Primer3 | |
| 16 | |
| 17 This tool uses helper scripts developed at IPK | |
| 18 | |
| 19 http://pgrc.ipk-gatersleben.de/misa/primer3.html | |
| 20 | |
| 21 | |
| 22 | |
| 23 | |
| 24 </help> | |
| 25 | |
| 26 | |
| 27 </tool> |