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view MISA/design_MISA.xml @ 0:3006582bfc76

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Uploaded V1.0 MISA tools and helper scripts
author john-mccallum
date Wed, 14 Sep 2011 23:57:57 -0400
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<tool id="design_MISA_1" name="MISA Primer Design">
  <description>Design primer sets using MISA output </description>
  <command interpreter="bash">design_MISA.sh  $inputMisaFile $inputFastaFile $outputfile</command>
  <inputs>
    <param format="misa" name="inputMisaFile" type="data" label="Misa Source file"/>
    <param format="fasta" name="inputFastaFile" type="data" label="Fasta Source file"/>
  </inputs>
  <outputs>
     <data format="tabular"  name="outputfile" />
  </outputs>
<help>

.. class:: infomark

Design SSR primer sets from MISA output using Primer3

This tool uses helper scripts developed at IPK

http://pgrc.ipk-gatersleben.de/misa/primer3.html




</help>


</tool>