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changeset 26:7983a9305b53 draft

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Uploaded
author johnheap
date Wed, 05 Jun 2019 05:54:10 -0400
parents c0a6a170163e
children 92c5ecb025b6
files Tryp_V_T.py
diffstat 1 files changed, 2 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/Tryp_V_T.py	Tue Jun 04 18:11:54 2019 -0400
+++ b/Tryp_V_T.py	Wed Jun 05 05:54:10 2019 -0400
@@ -96,7 +96,8 @@
     dir_path = os.path.dirname(os.path.realpath(__file__))  # directory of this file
     refPath = dir_path + "/data/Reference/" + ref + "/" + refBase   # eg refPath = data/Reference/Trinity/Trinity.fasta
     # used for dirty # refPath = 'Trinity.fasta' # dirty one
-    track_df = pd.read_csv(dir_path+'/' + name + '.cuff/genes.fpkm_tracking', sep='\t')
+    cur_path = os.getcwd()
+    track_df = pd.read_csv(cur_path+'/' + name + '.cuff/genes.fpkm_tracking', sep='\t')
     names = track_df['locus']
     # print(len(names))
     # print(names[:5])