Mercurial > repos > jowong > prince_galaxy

changeset 7:0032da940600 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload
author jowong
date Mon, 29 Oct 2018 08:30:06 -0400
parents 9f0a24e2ceb8
children 63f3743c2ae4
files Galaxy-Workflow-prince_workflow.ga prince.xml
diffstat 2 files changed, 3 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/Galaxy-Workflow-prince_workflow.ga	Mon Oct 29 08:30:06 2018 -0400
@@ -0,0 +1,1 @@
+{"uuid": "9f360164-f520-437c-b0e5-3cf7c2b42424", "tags": [], "format-version": "0.1", "name": "prince workflow", "steps": {"0": {"tool_id": null, "tool_version": null, "outputs": [], "workflow_outputs": [], "input_connections": {}, "tool_state": "{\"collection_type\": \"list:paired\"}", "id": 0, "uuid": "f2412c19-6997-4c16-9286-39939c4edac6", "errors": null, "name": "Input dataset collection", "label": null, "inputs": [], "position": {"top": 368.5, "left": 200}, "annotation": "", "content_id": null, "type": "data_collection_input"}, "1": {"tool_id": "data_path", "tool_version": "1.0.0", "outputs": [{"type": "txt", "name": "output"}], "workflow_outputs": [], "input_connections": {"paths": {"output_name": "output", "id": 0}}, "tool_state": "{\"paths\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__rerun_remap_job_id__\": null, \"__page__\": null}", "id": 1, "uuid": "d67bbfc0-5495-4e71-a0d1-f8856ac4b57e", "errors": null, "name": "Data Path", "post_job_actions": {"HideDatasetActionoutput": {"output_name": "output", "action_type": "HideDatasetAction", "action_arguments": {}}}, "label": null, "inputs": [{"name": "paths", "description": "runtime parameter for tool Data Path"}], "position": {"top": 433.5, "left": 492.5}, "annotation": "", "content_id": "data_path", "type": "tool"}, "2": {"tool_id": "filler", "tool_version": "1.0.0", "outputs": [{"type": "data", "name": "output"}], "workflow_outputs": [], "input_connections": {"data_input|input1": {"output_name": "output", "id": 0}}, "tool_state": "{\"__page__\": null, \"__rerun_remap_job_id__\": null, \"data_input\": \"{\\\"data_selector\\\": \\\"paired\\\", \\\"input1\\\": {\\\"values\\\": [{\\\"src\\\": \\\"hdca\\\", \\\"id\\\": 22}]}, \\\"__current_case__\\\": 0}\"}", "id": 2, "uuid": "fcba5578-0995-4ad2-930f-1978b45d1ff9", "errors": null, "name": "Filler", "post_job_actions": {"HideDatasetActionoutput": {"output_name": "output", "action_type": "HideDatasetAction", "action_arguments": {}}}, "label": null, "inputs": [], "position": {"top": 224.5, "left": 725}, "annotation": "", "content_id": "filler", "type": "tool"}, "3": {"tool_id": "toolshed.g2.bx.psu.edu/repos/jowong/prince_galaxy/prince/0.1.1", "tool_version": "0.1.1", "outputs": [{"type": "txt", "name": "output1"}], "workflow_outputs": [], "input_connections": {"input1": {"output_name": "output", "id": 1}}, "tool_state": "{\"__page__\": null, \"__rerun_remap_job_id__\": null, \"input1\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\"}", "id": 3, "tool_shed_repository": {"owner": "jowong", "changeset_revision": "dde3036465de", "name": "prince_galaxy", "tool_shed": "toolshed.g2.bx.psu.edu"}, "uuid": "82f54092-9803-487e-9bc9-8d77a621ecfe", "errors": null, "name": "VNTR copy number approximation", "post_job_actions": {"HideDatasetActionoutput1": {"output_name": "output1", "action_type": "HideDatasetAction", "action_arguments": {}}}, "label": null, "inputs": [{"name": "input1", "description": "runtime parameter for tool VNTR copy number approximation"}], "position": {"top": 370.5, "left": 725}, "annotation": "", "content_id": "toolshed.g2.bx.psu.edu/repos/jowong/prince_galaxy/prince/0.1.1", "type": "tool"}, "4": {"tool_id": "prince_postprocess", "tool_version": "1.0.0", "outputs": [{"type": "txt", "name": "output"}], "workflow_outputs": [{"output_name": "output", "uuid": "b978568d-5780-46fc-9b94-7dd52decc0ed", "label": null}], "input_connections": {"paths": {"output_name": "output", "id": 2}, "prince_output": {"output_name": "output1", "id": 3}}, "tool_state": "{\"paths\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__rerun_remap_job_id__\": null, \"prince_output\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__page__\": null}", "id": 4, "uuid": "ad79612c-1076-4fa0-a919-e5f119caa7b8", "errors": null, "name": "Prince Postprocess", "post_job_actions": {}, "label": null, "inputs": [{"name": "paths", "description": "runtime parameter for tool Prince Postprocess"}, {"name": "prince_output", "description": "runtime parameter for tool Prince Postprocess"}], "position": {"top": 374.5, "left": 1039.5}, "annotation": "", "content_id": "prince_postprocess", "type": "tool"}}, "annotation": "", "a_galaxy_workflow": "true"}
\ No newline at end of file
--- a/prince.xml	Mon Oct 29 08:09:01 2018 -0400
+++ b/prince.xml	Mon Oct 29 08:30:06 2018 -0400
@@ -37,8 +37,8 @@
     <citations>
         <citation type="bibtex">
 @misc{githubPythonPRINCE,
-  author = {LastTODO, FirstTODO},
-  year = {TODO},
+  author = {Booth, Julian},
+  year = {2018},
   title = {PythonPRINCE},
   publisher = {GitHub},
   journal = {GitHub repository},