comparison README @ 2:cac848910bd8

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2:cac848910bd8

Copyright (c) 2012, Kenneth Sabir
All rights reserved.

Redistribution and use in source and binary forms, with or without modification, are permitted provided 
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    - Redistributions of source code must retain the above copyright notice, this list of conditions and 
        the following disclaimer.
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        the following disclaimer in the documentation and/or other materials provided with the distribution.
    - Neither the name of the Garvan Institute nor the names of its contributors may be used to endorse 
        or promote products derived from this software without specific prior written permission.

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INSTALLATION:
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Set the number of threads to use by editing: 
fastq_groomer_parallel.xml:
Modify the last argument in the <command> tag, Default is 8

Tested on galaxy-dist -r e6444e7a1685
This currently depends on the following galaxy_utils python library which should come with the default galaxy install

More info:
    from galaxy_utils.sequence.fastq import fastqReader, fastqVerboseErrorReader, fastqAggregator, fastqWriter
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