diff README @ 2:cac848910bd8

Uploaded

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+++ b/README	Fri Sep 14 03:17:38 2012 -0400
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+Copyright (c) 2012, Kenneth Sabir
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without modification, are permitted provided 
+that the following conditions are met:
+
+    - Redistributions of source code must retain the above copyright notice, this list of conditions and 
+        the following disclaimer.
+    - Redistributions in binary form must reproduce the above copyright notice, this list of conditions and 
+        the following disclaimer in the documentation and/or other materials provided with the distribution.
+    - Neither the name of the Garvan Institute nor the names of its contributors may be used to endorse 
+        or promote products derived from this software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, 
+INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 
+ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, 
+INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF 
+SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY 
+THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING 
+IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+##################################################
+INSTALLATION:
+#================================================#
+
+Set the number of threads to use by editing: 
+fastq_groomer_parallel.xml:
+Modify the last argument in the <command> tag, Default is 8
+
+Tested on galaxy-dist -r e6444e7a1685
+This currently depends on the following galaxy_utils python library which should come with the default galaxy install
+
+More info:
+    from galaxy_utils.sequence.fastq import fastqReader, fastqVerboseErrorReader, fastqAggregator, fastqWriter
+##################################################