diff tool_dependencies.xml @ 22:062399f3787f draft

new version of gbsx: v1.2 with barcodeGenerator, demultiplex and digest

--- a/tool_dependencies.xml	Wed Jan 13 11:47:58 2016 -0500
+++ b/tool_dependencies.xml	Tue Jan 26 07:38:36 2016 -0500
@@ -1,10 +1,12 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="GBSX" version="1.1.5">
+    <package name="GBSX" version="1.2">
         <install version="1.0">
             <actions>
-                <action type="download_by_url">https://github.com/GenomicsCoreLeuven/GBSX/releases/download/v1.1.5/GBSX_v1.1.5.jar</action>
-                <action type="move_file" rename_to="GBSX.jar"><source>GBSX_v1.1.5.jar</source><destination>$INSTALL_DIR</destination></action>
+                <action type="download_by_url">https://github.com/GenomicsCoreLeuven/GBSX/releases/download/v1.2/GBSX_v1.2.jar</action>
+                <action type="move_file" rename_to="GBSX.jar"><source>GBSX_v1.2.jar</source><destination>$INSTALL_DIR</destination></action>
+                <action type="download_by_url">https://github.com/GenomicsCoreLeuven/GBSX/releases/download/v1.2/GBSX_digest_v1.1.pl</action>
+                <action type="move_file" rename_to="GBSX_digest.pl"><source>GBSX_digest_v1.1.pl</source><destination>$INSTALL_DIR</destination></action>
                 <action type="set_environment">
                     <environment_variable name="GBSX_PATH" action="set_to">$INSTALL_DIR</environment_variable>
                 </action>
@@ -12,4 +14,7 @@
         </install>
         <readme>Installs the GBSX jar.</readme>
     </package>
+    <package name="bioperl" version="1.6.922">
+      <repository name="package_bioperl_1_6" changeset_revision="0:5ef71da82044" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu/" />
+    </package>
 </tool_dependency>