Mercurial > repos > konradpaszkiewicz > assemblystats

annotate README_ASSEMBLY_STATS @ 0:6544228ea290 default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
author konradpaszkiewicz
date Tue, 07 Jun 2011 16:24:46 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
6544228ea290 Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
konradpaszkiewicz
parents:
diff changeset
1 #Created 07/01/2011
6544228ea290 Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
konradpaszkiewicz
parents:
diff changeset
2 #Konrad Paszkiewicz, University of Exeter
6544228ea290 Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
konradpaszkiewicz
parents:
diff changeset
3
6544228ea290 Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
konradpaszkiewicz
parents:
diff changeset
4 Assembly stats
6544228ea290 Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
konradpaszkiewicz
parents:
diff changeset
5
6544228ea290 Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
konradpaszkiewicz
parents:
diff changeset
6 This series of scripts calculates various metrics on an input FASTA file. Typically this is most useful on either denovo genomic or transcriptomic data.
6544228ea290 Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
konradpaszkiewicz
parents:
diff changeset
7
6544228ea290 Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
konradpaszkiewicz
parents:
diff changeset
8 Prerequisites:
6544228ea290 Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
konradpaszkiewicz
parents:
diff changeset
9
6544228ea290 Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
konradpaszkiewicz
parents:
diff changeset
10 1. The bundled perl script fasta_summary.pl
6544228ea290 Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
konradpaszkiewicz
parents:
diff changeset
11
6544228ea290 Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
konradpaszkiewicz
parents:
diff changeset
12 Limitations:
6544228ea290 Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
konradpaszkiewicz
parents:
diff changeset
13
6544228ea290 Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
konradpaszkiewicz
parents:
diff changeset
14 Ideally this should output a composite dataset of some sort