Mercurial > repos > konradpaszkiewicz > assemblystats

view README_ASSEMBLY_STATS @ 0:6544228ea290 default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
author konradpaszkiewicz
date Tue, 07 Jun 2011 16:24:46 -0400
parents
children
line wrap: on
line source

#Created 07/01/2011
#Konrad Paszkiewicz, University of Exeter

Assembly stats

This series of scripts calculates various metrics on an input FASTA file. Typically this is most useful on either denovo genomic or transcriptomic data.

Prerequisites:

1. The bundled perl script fasta_summary.pl 

Limitations:

Ideally this should output a composite dataset of some sort