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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
author konradpaszkiewicz
date Tue, 07 Jun 2011 17:41:37 -0400
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53e887dda799 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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1 #Created 07/01/2011
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2 #Konrad Paszkiewicz, Exeter Sequencing Service, University of Exeter
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53e887dda799 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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4 Oases optimiser
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53e887dda799 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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6 This Galaxy tool is intended to provide a crude but effective method of producing semi-optimised transcriptome assemblies. It operates by performing a number of user defined Velvet assemblies upon which Oases is then run. The results of all of these runs are then put through a final Oases step where they act as scaffolds for the main assembly.
53e887dda799 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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53e887dda799 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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8 Prerequisites:
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53e887dda799 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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10 1. Enclosed scripts
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11 2. Working installation of Velvet and Oases
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53e887dda799 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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13 Limitations:
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53e887dda799 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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15 This is a crude optimisation step which DOES NOT try to evaluate the quality of each assembly or map to any reference cDNA.