Mercurial > repos > konradpaszkiewicz > oasesoptimiser

diff README @ 0:53e887dda799 default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
author konradpaszkiewicz
date Tue, 07 Jun 2011 17:41:37 -0400
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/README	Tue Jun 07 17:41:37 2011 -0400
@@ -0,0 +1,15 @@
+#Created 07/01/2011
+#Konrad Paszkiewicz, Exeter Sequencing Service, University of Exeter 
+
+Oases optimiser
+
+This Galaxy tool is intended to provide a crude but effective method of producing semi-optimised transcriptome assemblies. It operates by performing a number of user defined Velvet assemblies upon which Oases is then run. The results of all of these runs are then put through a final Oases step where they act as scaffolds for the main assembly.
+
+Prerequisites:
+
+1. Enclosed scripts
+2. Working installation of Velvet and Oases
+
+Limitations:
+
+This is a crude optimisation step which DOES NOT try to evaluate the quality of each assembly or map to any reference cDNA.