Mercurial > repos > konradpaszkiewicz > oasesoptimiser
diff README @ 0:53e887dda799 default tip
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
author | konradpaszkiewicz |
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date | Tue, 07 Jun 2011 17:41:37 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README Tue Jun 07 17:41:37 2011 -0400 @@ -0,0 +1,15 @@ +#Created 07/01/2011 +#Konrad Paszkiewicz, Exeter Sequencing Service, University of Exeter + +Oases optimiser + +This Galaxy tool is intended to provide a crude but effective method of producing semi-optimised transcriptome assemblies. It operates by performing a number of user defined Velvet assemblies upon which Oases is then run. The results of all of these runs are then put through a final Oases step where they act as scaffolds for the main assembly. + +Prerequisites: + +1. Enclosed scripts +2. Working installation of Velvet and Oases + +Limitations: + +This is a crude optimisation step which DOES NOT try to evaluate the quality of each assembly or map to any reference cDNA.