diff GEMBASSY-1.0.3/acd/gseq2png.acd @ 0:8300eb051bea draft

Initial upload

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/GEMBASSY-1.0.3/acd/gseq2png.acd	Fri Jun 26 05:19:29 2015 -0400
@@ -0,0 +1,60 @@
+application: gseq2png [
+  documentation: "Converts a sequence to PNG image"
+  groups: "Display"
+  embassy: "gembassy"
+  relations: "EDAM_topic:0092 Data visualisation"
+  relations: "EDAM_topic:0157 Sequence composition analysis"
+  relations: "EDAM_operation:0377 Sequence composition calculation
+              (nucleic acid)"
+]
+
+section: input [
+  information: "Input section"
+  type: "page"
+]
+
+  seqall: sequence [
+    parameter: "Y"
+    type: "nucleotide"
+    features: "Y"
+    relations: "EDAM_data:0849 Sequence record"
+  ]
+
+  string: format [
+    information: "Output file format. Dependent on 'convert' command"
+    knowntype: "output format"
+    default: "png"
+  ]
+
+endsection: input
+
+section: advanced [
+  information: "Advanced section"
+  type: "page"
+]
+
+  integer: width [
+    information: "Width of the image"
+    default: "640"
+  ]
+
+  integer: window [
+    information: "Window size of a sequence to represent each pixel"
+    default: "20"
+  ]
+
+endsection: advanced
+
+section: output [
+  information: "Output section"
+  type: "page"
+]
+
+  string: goutfile [
+    information: "Output file for non interactive displays"
+    knowntype: "output filename"
+    relations: "EDAM_data:2166 Sequence composition plot"
+    default: "gseq2png"
+  ]
+
+endsection: output