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1 application: gseq2png [
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2 documentation: "Converts a sequence to PNG image"
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3 groups: "Display"
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4 embassy: "gembassy"
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5 relations: "EDAM_topic:0092 Data visualisation"
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6 relations: "EDAM_topic:0157 Sequence composition analysis"
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7 relations: "EDAM_operation:0377 Sequence composition calculation
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8 (nucleic acid)"
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9 ]
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10
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11 section: input [
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12 information: "Input section"
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13 type: "page"
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14 ]
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15
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16 seqall: sequence [
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17 parameter: "Y"
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18 type: "nucleotide"
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19 features: "Y"
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20 relations: "EDAM_data:0849 Sequence record"
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21 ]
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22
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23 string: format [
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24 information: "Output file format. Dependent on 'convert' command"
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25 knowntype: "output format"
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26 default: "png"
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27 ]
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28
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29 endsection: input
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30
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31 section: advanced [
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32 information: "Advanced section"
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33 type: "page"
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34 ]
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35
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36 integer: width [
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37 information: "Width of the image"
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38 default: "640"
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39 ]
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40
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41 integer: window [
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42 information: "Window size of a sequence to represent each pixel"
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43 default: "20"
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44 ]
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45
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46 endsection: advanced
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47
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48 section: output [
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49 information: "Output section"
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50 type: "page"
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51 ]
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52
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53 string: goutfile [
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54 information: "Output file for non interactive displays"
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55 knowntype: "output filename"
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56 relations: "EDAM_data:2166 Sequence composition plot"
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57 default: "gseq2png"
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58 ]
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59
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60 endsection: output
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