view glang-galaxy-conf/gembassy/gfindoriter.xml @ 2:8947fca5f715 draft default tip

Uploaded

<tool id="EMBOSS: gfindoriter" name="gfindoriter" version="1.0.2">
  <description>Predicts the replication origin and terminus in bacterial genomes</description>
  <command>gfindoriter -sequence $input1 -window $window -purine $purine -keto $keto -lowpass $lowpass -auto -noaccid -outfile $out_file1</command>
  <inputs>
  <param format="data" name="input1" type="data">
    <label>Sequence</label>
  </param>
    <param name="window" size="4" type="integer" value="4096">
      <label>Number of windows to use for Fat Fourier Transform. Only active when -lowpass option is specified. Value must be the power of two</label>
    </param>
    <param name="purine" type="select" value="no">
      <label>Use purine skew for calculation</label>
      <option value="no">No</option>
      <option value="yes">Yes</option>
    </param>
    <param name="keto" type="select" value="no">
      <label>Use keto skew for calculation</label>
      <option value="no">No</option>
      <option value="yes">Yes</option>
    </param>
    <param name="lowpass" size="4" type="integer" value="95">
      <label>Lowpass filter strength in percent. Typically 95 or 99 works best</label>
    </param>

  </inputs>
  <outputs>
    <data format="txt" name="out_file1" label="${tool.name} for ${input1.name}" />    
  </outputs>
</tool>