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view glang-galaxy-conf/gembassy/goligomercounter.xml @ 2:8947fca5f715 draft default tip

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author ktnyt
date Fri, 26 Jun 2015 05:21:44 -0400
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<tool id="EMBOSS: goligomercounter" name="goligomercounter" version="1.0.2">
  <description>Counts the number of given oligomers in a sequence</description>
  <command>goligomercounter -sequence $input1 -oligomer $oligomer -window $window -auto -noaccid -outfile $out_file1</command>
  <inputs>
  <param format="data" name="input1" type="data">
    <label>Sequence</label>
  </param>
  <param name="oligomer" size="8" type="text" value="">
    <label>Oligomer to count</label>
  </param>
  <param name="window" size="4" type="integer" value="">
    <label>Int window size</label>
  </param>

  </inputs>
  <outputs>
    <data format="txt" name="out_file1" label="${tool.name} for ${input1.name}" />    
  </outputs>
</tool>