view glang-galaxy-conf/kbws/kcentroidfold.xml @ 2:8947fca5f715 draft default tip

Uploaded

<tool id="EMBOSS: kcentroidfold" name="kcentroidfold" version="1.0.2">
  <description>Predicts RNA 2D structure using CentroidFold</description>
  <command>kcentroidfold -seqall $input1 -engine $engine -gamma $gamma -auto -outfile $out_file1</command>
  <inputs>
  <param format="data" name="input1" type="data">
    <label>Sequence</label>
  </param>
    <param name="engine" size="4" type="text" value="CONTRAfold">
      <label>specify the inference engine. 'CONTRAfold', 'McCaskill', 'pfold' or 'AUX'</label>
    </param>
    <param name="gamma" size="4" type="integer" value="4">
      <label>weight of base pairs (2^-5 ~ 2^10)</label>
    </param>

  </inputs>
  <outputs>
    <data format="txt" name="out_file1" label="${tool.name} for ${input1.name}" />    
  </outputs>
</tool>