Mercurial > repos > labis-app > galaxy_proteomics
diff t-test.xml @ 0:ba070efb6f78 draft
planemo upload commit 13e72e84c523bda22bda792bbebf4720d28542d5-dirty
author | labis-app |
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date | Tue, 03 Jul 2018 17:34:13 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/t-test.xml Tue Jul 03 17:34:13 2018 -0400 @@ -0,0 +1,45 @@ +<?xml version="1.0"?> +<tool id="t-test" name="T-Test" version="1.0" hidden="false"> + <description> + </description> + <command interpreter="Rscript"> + t-test.R --inputfile_name=$input --type=$t_test_type --outputfile_name=$output + </command> + + <inputs> + <param format="tabular" name="input" type="data" label="Input table"/> + <param format="txt" name="t_test_type" type="select" label="Type of T-test"> + <option value="lfqlog2"> Log2 of LFQ Intensity </option> + <option value="intensity"> Intensity </option> + <option value="mscount"> MS Count </option> + </param> + </inputs> + + <outputs> + <data format="tabular" name="output" label="Complete table with p-values and significance on ${input.name}"/> + </outputs> + + <tests> + <test> + <param name="input" value="f1.fasta"/> + <param name="t_test_type" value="Intensity"/> + <output name="output" file="result_T_test.csv"/> + </test> + </tests> + + <help> + ** What it does ** + This tool executes an RScript that produces a p-values colum on the table. + </help> + + <citations> + <citation type="bibtex"> + @misc{Concatenate, + author = {Application, Labis}, + year = 2018, + title = Concatenate, + publisher = labisapplications + } + </citation> + </citations> +</tool>