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<?xml version="1.0"?>
<tool id="t-test" name="T-Test" version="1.0" hidden="false">
    <description>
    </description>
    <command interpreter="Rscript">
        t-test.R --inputfile_name=$input --type=$t_test_type --outputfile_name=$output
    </command>

    <inputs>
        <param format="tabular" name="input" type="data" label="Input table"/>
        <param format="txt" name="t_test_type" type="select" label="Type of T-test">
          <option value="lfqlog2"> Log2 of LFQ Intensity </option>
          <option value="intensity"> Intensity </option>
          <option value="mscount"> MS Count </option>
        </param>
    </inputs>

    <outputs>
        <data format="tabular" name="output" label="Complete table with p-values and significance on ${input.name}"/>
    </outputs>

    <tests>
        <test>
            <param name="input" value="f1.fasta"/>
            <param name="t_test_type" value="Intensity"/>
            <output name="output" file="result_T_test.csv"/>
        </test>
    </tests>

    <help>
        ** What it does **
        This tool executes an RScript that produces a p-values colum on the table.
    </help>

    <citations>
        <citation type="bibtex">
          @misc{Concatenate,
            author = {Application, Labis},
            year = 2018,
            title = Concatenate,
            publisher = labisapplications
          }
        </citation>
    </citations>
</tool>