diff t-test.xml @ 0:ba070efb6f78 draft

planemo upload commit 13e72e84c523bda22bda792bbebf4720d28542d5-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/t-test.xml	Tue Jul 03 17:34:13 2018 -0400
@@ -0,0 +1,45 @@
+<?xml version="1.0"?>
+<tool id="t-test" name="T-Test" version="1.0" hidden="false">
+    <description>
+    </description>
+    <command interpreter="Rscript">
+        t-test.R --inputfile_name=$input --type=$t_test_type --outputfile_name=$output
+    </command>
+
+    <inputs>
+        <param format="tabular" name="input" type="data" label="Input table"/>
+        <param format="txt" name="t_test_type" type="select" label="Type of T-test">
+          <option value="lfqlog2"> Log2 of LFQ Intensity </option>
+          <option value="intensity"> Intensity </option>
+          <option value="mscount"> MS Count </option>
+        </param>
+    </inputs>
+
+    <outputs>
+        <data format="tabular" name="output" label="Complete table with p-values and significance on ${input.name}"/>
+    </outputs>
+
+    <tests>
+        <test>
+            <param name="input" value="f1.fasta"/>
+            <param name="t_test_type" value="Intensity"/>
+            <output name="output" file="result_T_test.csv"/>
+        </test>
+    </tests>
+
+    <help>
+        ** What it does **
+        This tool executes an RScript that produces a p-values colum on the table.
+    </help>
+
+    <citations>
+        <citation type="bibtex">
+          @misc{Concatenate,
+            author = {Application, Labis},
+            year = 2018,
+            title = Concatenate,
+            publisher = labisapplications
+          }
+        </citation>
+    </citations>
+</tool>