diff tools/myTools/4_getFVS.xml @ 1:7e5c71b2e71f draft default tip

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tools/myTools/4_getFVS.xml	Wed Dec 22 16:00:34 2021 +0000
@@ -0,0 +1,36 @@
+<tool id="netisce4" name="Netisce Step 4" version="0.1.0" python_template_version="3.5">
+<description>Computes the minimal Feedback Vertex Set of the network</description>
+
+    <requirements>
+        <requirement type="package" version="1.11.0">networkx</requirement>
+        <requirement type="package" version="3.5.0">random</requirement>
+        <requirement type="package" version="1.0.0">FVS_python3</requirement>
+        <requirement type="package" version="3.5.0">re</requirement>
+        <requirement type="package" version="3.5.0">csv</requirement>
+        <requirement type="package" version="3.5.0">sys</requirement>
+    </requirements>
+
+    <command>python3 '$__tool_directory__/bin/FVS_run.py' '$network' fvs.txt</command>
+
+    <inputs>
+        <param name="network" type="data" format="sif" label="Network"/>
+    </inputs>
+
+    <outputs>
+        <data name="output" format="txt" from_work_dir="fvs.txt" label="Feedback Vertex Set"/>
+    </outputs>
+
+    <tests>
+        <test>
+            <param name="network" value="network.sif" />
+            <output name="output" value="fvs.txt" />
+        </test>
+    </tests>
+
+    <help>
+    This tool computes the minimal Feedback Vertex Set using Control Systems theory and the topological features of the network.
+    Required Inputs:
+    1. network in sif format (activating edges as "activates", inhibitory edges as "inhibits")
+    </help>
+
+</tool>
\ No newline at end of file