view tools/myTools/4_getFVS.xml @ 1:7e5c71b2e71f draft default tip

Uploaded

<tool id="netisce4" name="Netisce Step 4" version="0.1.0" python_template_version="3.5">
<description>Computes the minimal Feedback Vertex Set of the network</description>

    <requirements>
        <requirement type="package" version="1.11.0">networkx</requirement>
        <requirement type="package" version="3.5.0">random</requirement>
        <requirement type="package" version="1.0.0">FVS_python3</requirement>
        <requirement type="package" version="3.5.0">re</requirement>
        <requirement type="package" version="3.5.0">csv</requirement>
        <requirement type="package" version="3.5.0">sys</requirement>
    </requirements>

    <command>python3 '$__tool_directory__/bin/FVS_run.py' '$network' fvs.txt</command>

    <inputs>
        <param name="network" type="data" format="sif" label="Network"/>
    </inputs>

    <outputs>
        <data name="output" format="txt" from_work_dir="fvs.txt" label="Feedback Vertex Set"/>
    </outputs>

    <tests>
        <test>
            <param name="network" value="network.sif" />
            <output name="output" value="fvs.txt" />
        </test>
    </tests>

    <help>
    This tool computes the minimal Feedback Vertex Set using Control Systems theory and the topological features of the network.
    Required Inputs:
    1. network in sif format (activating edges as "activates", inhibitory edges as "inhibits")
    </help>

</tool>