diff tools/myTools/7_check_icns.xml @ 1:7e5c71b2e71f draft default tip

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tools/myTools/7_check_icns.xml	Wed Dec 22 16:00:34 2021 +0000
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+<tool id="netisce7" name="Netisce Step 7" version="0.1.0" R_template_version="4.0.4">
+<description>Checks the values of internal-marker nodes in attractors generated from experimental data</description>
+
+    <requirements>
+        <requirement type="package" version="1.8.6">plyr</requirement>
+        <requirement type="package" version="1.0.7">dplyr</requirement>
+        <requirement type="package" version="3.3.0">ggplot2</requirement>
+        <requirement type="package" version="1.4.4">reshape2</requirement>
+        <requirement type="package" version="2.1.1">readr</requirement>
+    </requirements>
+    
+    <command> Rscript '$__tool_directory__/bin/icn_check1.R' '$attrs_exp' '$samples'</command>
+
+    <inputs>
+        <param name="samples" type="data" format="txt" label="Name of Experimental Samples"/>
+        <param name="attrs_exp" type="data" format="tabular" label="internal marker nodes from Experimental Attractors"/>
+    </inputs>
+
+    <outputs>
+        <data name="output" format="png" from_work_dir="experimental_internalmarkers.png" label="internal marker node values from experimental attractors plotted"/>
+    </outputs>
+
+    <tests>
+        <test>
+            <param name="attrs_exp" value="attrs_exp.tsv" />
+            <param name="samples" value="samples.txt" />
+            <output name="output" value="experimental_internalmarkers.png" ftype="png" />
+        </test>
+    </tests>
+
+    <help>
+    This tool checks the values of internal-marker nodes in attractors generated from experimental data 
+    Required Inputs:
+    1. name of all experimental samples of interest
+    2. experimental attractors
+    </help>
+
+</tool>
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