view tools/myTools/7_check_icns.xml @ 1:7e5c71b2e71f draft default tip

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<tool id="netisce7" name="Netisce Step 7" version="0.1.0" R_template_version="4.0.4">
<description>Checks the values of internal-marker nodes in attractors generated from experimental data</description>

    <requirements>
        <requirement type="package" version="1.8.6">plyr</requirement>
        <requirement type="package" version="1.0.7">dplyr</requirement>
        <requirement type="package" version="3.3.0">ggplot2</requirement>
        <requirement type="package" version="1.4.4">reshape2</requirement>
        <requirement type="package" version="2.1.1">readr</requirement>
    </requirements>
    
    <command> Rscript '$__tool_directory__/bin/icn_check1.R' '$attrs_exp' '$samples'</command>

    <inputs>
        <param name="samples" type="data" format="txt" label="Name of Experimental Samples"/>
        <param name="attrs_exp" type="data" format="tabular" label="internal marker nodes from Experimental Attractors"/>
    </inputs>

    <outputs>
        <data name="output" format="png" from_work_dir="experimental_internalmarkers.png" label="internal marker node values from experimental attractors plotted"/>
    </outputs>

    <tests>
        <test>
            <param name="attrs_exp" value="attrs_exp.tsv" />
            <param name="samples" value="samples.txt" />
            <output name="output" value="experimental_internalmarkers.png" ftype="png" />
        </test>
    </tests>

    <help>
    This tool checks the values of internal-marker nodes in attractors generated from experimental data 
    Required Inputs:
    1. name of all experimental samples of interest
    2. experimental attractors
    </help>

</tool>