Mercurial > repos > laurenmarazzi > netisce_test
view tools/myTools/bin/sfa/data/cho_2016/__init__.py @ 1:7e5c71b2e71f draft default tip
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author | laurenmarazzi |
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date | Wed, 22 Dec 2021 16:00:34 +0000 |
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# -*- coding: utf-8 -*- """ [Reference] Cho et al. Attractor landscape analysis of colorectal tumorigenesis and its reversion. BMC Systems Biology (2016) 10:96. """ import os import pandas as pd import sfa import sfa.base def create_data(): return ChoData() class ChoData(sfa.base.Data): def __init__(self): self._abbr = "CHO_2015" self._name = "Cho et al. BMC Systems Biology (2016) 10:96" inputs = {} inputs['ECM'] = 1.0 inputs['Tgf-b'] = 1.0 inputs['IL1-TNF'] = 1.0 inputs['EGF'] = 1.0 inputs['alpha_i_lig'] = 1.0 inputs['alpha_12_13_lig'] = 1.0 inputs['alpha_s_lig'] = 1.0 inputs['alpha_q_lig'] = 1.0 inputs['Stress'] = 1.0 inputs['WNT'] = 1.0 inputs['Fas'] = 1.0 inputs['ExtPump'] = 1.0 inputs['DNA_damage'] = 1.0 dpath = os.path.dirname(__file__) fpath_network = os.path.join(dpath, 'network_all_pos.sif') A, n2i, dg = sfa.read_sif(fpath_network, as_nx=True) self._A = A self._n2i = n2i self._i2n = {idx: name for name, idx in n2i.items()} self._dg = dg self._inputs = inputs # end of def __init__ # end of def class