Mercurial > repos > lcottret > met4j

annotate tools/tool_conf.xml @ 0:3cdcfdae8bd2 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
author lcottret
date Tue, 31 May 2022 07:45:16 +0000
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
3cdcfdae8bd2 "planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff changeset
1 <?xml version="1.0" encoding="UTF-8"?>
3cdcfdae8bd2 "planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff changeset
2 <toolbox monitor="true">
3cdcfdae8bd2 "planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff changeset
3 <section id="met4j" name="met4j apps">
3cdcfdae8bd2 "planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff changeset
4 <label id="attributes" text="met4j attributes" version=""/>
3cdcfdae8bd2 "planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff changeset
5 <tool file="met4j/attributes/ExtractPathways/ExtractPathways.xml"/>
3cdcfdae8bd2 "planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff changeset
6 <tool file="met4j/attributes/ExtractSbmlAnnot/ExtractSbmlAnnot.xml"/>
3cdcfdae8bd2 "planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff changeset
7 <tool file="met4j/attributes/SbmlSetChargesFromFile/SbmlSetChargesFromFile.xml"/>
3cdcfdae8bd2 "planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff changeset
8 <tool file="met4j/attributes/SbmlSetEcsFromFile/SbmlSetEcsFromFile.xml"/>
3cdcfdae8bd2 "planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff changeset
9 <tool file="met4j/attributes/SbmlSetFormulasFromFile/SbmlSetFormulasFromFile.xml"/>
3cdcfdae8bd2 "planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff changeset
10 <tool file="met4j/attributes/SbmlSetGprsFromFile/SbmlSetGprsFromFile.xml"/>
3cdcfdae8bd2 "planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff changeset
11 <tool file="met4j/attributes/SbmlSetNamesFromFile/SbmlSetNamesFromFile.xml"/>
3cdcfdae8bd2 "planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff changeset
12 <tool file="met4j/attributes/SbmlSetPathwaysFromFile/SbmlSetPathwaysFromFile.xml"/>
3cdcfdae8bd2 "planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff changeset
13 <tool file="met4j/attributes/SbmlSetRefsFromFile/SbmlSetRefsFromFile.xml"/>
3cdcfdae8bd2 "planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff changeset
14 <tool file="met4j/attributes/SbmlToMetaboliteTable/SbmlToMetaboliteTable.xml"/>
3cdcfdae8bd2 "planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff changeset
15 <label id="bigg" text="met4j bigg" version=""/>
3cdcfdae8bd2 "planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff changeset
16 <tool file="met4j/bigg/GetModelProteome/GetModelProteome.xml"/>
3cdcfdae8bd2 "planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff changeset
17 <label id="convert" text="met4j convert" version=""/>
3cdcfdae8bd2 "planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff changeset
18 <tool file="met4j/convert/FbcToNotes/FbcToNotes.xml"/>
3cdcfdae8bd2 "planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff changeset
19 <tool file="met4j/convert/Kegg2Sbml/Kegg2Sbml.xml"/>
3cdcfdae8bd2 "planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff changeset
20 <tool file="met4j/convert/Sbml2Graph/Sbml2Graph.xml"/>
3cdcfdae8bd2 "planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff changeset
21 <tool file="met4j/convert/Sbml2Tab/Sbml2Tab.xml"/>
3cdcfdae8bd2 "planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff changeset
22 <tool file="met4j/convert/Tab2Sbml/Tab2Sbml.xml"/>
3cdcfdae8bd2 "planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff changeset
23 <label id="networkAnalysis" text="met4j networkAnalysis" version=""/>
3cdcfdae8bd2 "planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff changeset
24 <tool file="met4j/networkAnalysis/CarbonSkeletonNet/CarbonSkeletonNet.xml"/>
3cdcfdae8bd2 "planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff changeset
25 <tool file="met4j/networkAnalysis/ChokePoint/ChokePoint.xml"/>
3cdcfdae8bd2 "planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff changeset
26 <tool file="met4j/networkAnalysis/CompoundNet/CompoundNet.xml"/>
3cdcfdae8bd2 "planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff changeset
27 <tool file="met4j/networkAnalysis/DistanceMatrix/DistanceMatrix.xml"/>
3cdcfdae8bd2 "planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff changeset
28 <tool file="met4j/networkAnalysis/ExtractSubNetwork/ExtractSubNetwork.xml"/>
3cdcfdae8bd2 "planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff changeset
29 <tool file="met4j/networkAnalysis/ExtractSubReactionNetwork/ExtractSubReactionNetwork.xml"/>
3cdcfdae8bd2 "planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff changeset
30 <tool file="met4j/networkAnalysis/LoadPoint/LoadPoint.xml"/>
3cdcfdae8bd2 "planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff changeset
31 <tool file="met4j/networkAnalysis/MetaboRank/MetaboRank.xml"/>
3cdcfdae8bd2 "planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff changeset
32 <tool file="met4j/networkAnalysis/NetworkSummary/NetworkSummary.xml"/>
3cdcfdae8bd2 "planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff changeset
33 <tool file="met4j/networkAnalysis/PrecursorNetwork/PrecursorNetwork.xml"/>
3cdcfdae8bd2 "planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff changeset
34 <tool file="met4j/networkAnalysis/ScopeNetwork/ScopeNetwork.xml"/>
3cdcfdae8bd2 "planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff changeset
35 <tool file="met4j/networkAnalysis/SideCompoundsScan/SideCompoundsScan.xml"/>
3cdcfdae8bd2 "planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff changeset
36 </section>
3cdcfdae8bd2 "planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff changeset
37 </toolbox>