camera_annotate: README.rst annotate

annotate README.rst @ 14:225cb8347572 draft

planemo upload commit 239d7043ccba9d1d1861d7d8ac353c77497e0880

author	lecorguille
date	Wed, 29 Nov 2017 10:03:27 -0500
parents	1c30ff90f3ae
children	6139bfcc95cb

rev	line source
8 8c5bb7b86df9 planemo upload lecorguille parents: diff changeset	1
8c5bb7b86df9 planemo upload lecorguille parents: diff changeset	2 Changelog/News
8c5bb7b86df9 planemo upload lecorguille parents: diff changeset	3 --------------
8c5bb7b86df9 planemo upload lecorguille parents: diff changeset	4
14 225cb8347572 planemo upload commit 239d7043ccba9d1d1861d7d8ac353c77497e0880 lecorguille parents: 13 diff changeset	5 Version 2.2.1 - 29/11/2017
225cb8347572 planemo upload commit 239d7043ccba9d1d1861d7d8ac353c77497e0880 lecorguille parents: 13 diff changeset	6
225cb8347572 planemo upload commit 239d7043ccba9d1d1861d7d8ac353c77497e0880 lecorguille parents: 13 diff changeset	7 - BUGFIX: To avoid issues with accented letter in the parentFile tag of the mzXML files, we changed a hidden mechanim to LC_ALL=C
225cb8347572 planemo upload commit 239d7043ccba9d1d1861d7d8ac353c77497e0880 lecorguille parents: 13 diff changeset	8
13 1c30ff90f3ae planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419 lecorguille parents: 9 diff changeset	9 Version 2.2.0 - 03/02/2017
1c30ff90f3ae planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419 lecorguille parents: 9 diff changeset	10
1c30ff90f3ae planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419 lecorguille parents: 9 diff changeset	11 - BUGFIX: the diffreport ids didn't convert the rt in minute as the other export
1c30ff90f3ae planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419 lecorguille parents: 9 diff changeset	12
1c30ff90f3ae planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419 lecorguille parents: 9 diff changeset	13 - UPDATE: the settings (digits, convertion in minutes) of the identifiants will no longer modify the native one. Because we want to be conservative and because it can be dangerous for the data integrity during a futur merge of the table, we decide to put those customization in a new column namecustom within the variableMetadata.
1c30ff90f3ae planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419 lecorguille parents: 9 diff changeset	14
1c30ff90f3ae planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419 lecorguille parents: 9 diff changeset	15 - IMPROVEMENT: add some sections within the form to separate the different parts of the process
1c30ff90f3ae planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419 lecorguille parents: 9 diff changeset	16
1c30ff90f3ae planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419 lecorguille parents: 9 diff changeset	17 - IMPROVEMENT: add the possibility to use defined ruleset
1c30ff90f3ae planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419 lecorguille parents: 9 diff changeset	18
1c30ff90f3ae planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419 lecorguille parents: 9 diff changeset	19 - IMPROVEMENT: add the possibility to set the MZ digit within the identifiants
1c30ff90f3ae planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419 lecorguille parents: 9 diff changeset	20
1c30ff90f3ae planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419 lecorguille parents: 9 diff changeset	21 - IMPROVEMENT: CAMERA.annotate is now compatible with merged individual data from xcms.xcmsSet
1c30ff90f3ae planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419 lecorguille parents: 9 diff changeset	22
1c30ff90f3ae planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419 lecorguille parents: 9 diff changeset	23
9 7da9252dd983 planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b lecorguille parents: 8 diff changeset	24 Version 2.1.5 - 21/04/2016
7da9252dd983 planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b lecorguille parents: 8 diff changeset	25
7da9252dd983 planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b lecorguille parents: 8 diff changeset	26 - UPGRADE: upgrate the CAMERA version from 1.22.0 to 1.26.0
7da9252dd983 planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b lecorguille parents: 8 diff changeset	27
7da9252dd983 planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b lecorguille parents: 8 diff changeset	28
7da9252dd983 planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b lecorguille parents: 8 diff changeset	29 Version 2.1.4 - 18/04/2016
7da9252dd983 planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b lecorguille parents: 8 diff changeset	30
7da9252dd983 planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b lecorguille parents: 8 diff changeset	31 - TEST: refactoring to pass planemo test using conda dependencies
7da9252dd983 planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b lecorguille parents: 8 diff changeset	32
7da9252dd983 planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b lecorguille parents: 8 diff changeset	33 Version 2.1.3 - 10/02/2016
8 8c5bb7b86df9 planemo upload lecorguille parents: diff changeset	34
8c5bb7b86df9 planemo upload lecorguille parents: diff changeset	35 - BUGFIX: better management of errors. Datasets remained green although the process failed
8c5bb7b86df9 planemo upload lecorguille parents: diff changeset	36
8c5bb7b86df9 planemo upload lecorguille parents: diff changeset	37 - BUGFIX: the conversion into minutes of the retention time was applied to the diffreport outputs (several conditions)
8c5bb7b86df9 planemo upload lecorguille parents: diff changeset	38
8c5bb7b86df9 planemo upload lecorguille parents: diff changeset	39 - IMPROVEMENT: when there are several conditions, the tool will generate individual datasets (tsv, pdf) instead of a zip file. The usual png (eic, boxplot) will from now be integrated in two pdf.
8c5bb7b86df9 planemo upload lecorguille parents: diff changeset	40
8c5bb7b86df9 planemo upload lecorguille parents: diff changeset	41 - UPDATE: refactoring of internal management of inputs/outputs
8c5bb7b86df9 planemo upload lecorguille parents: diff changeset	42
8c5bb7b86df9 planemo upload lecorguille parents: diff changeset	43
13 1c30ff90f3ae planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419 lecorguille parents: 9 diff changeset	44 VERSION 2.1.0 - 09/10/2015
8 8c5bb7b86df9 planemo upload lecorguille parents: diff changeset	45
8c5bb7b86df9 planemo upload lecorguille parents: diff changeset	46 - BUGFIX: There was a bug with the CAMERA.annotate (generating a bad dataMatrix (intensities which don't match with the metabolites))
8c5bb7b86df9 planemo upload lecorguille parents: diff changeset	47
8c5bb7b86df9 planemo upload lecorguille parents: diff changeset	48
13 1c30ff90f3ae planemo upload commit 301d42e88026afdac618f4ec56fc6cbe19e3e419 lecorguille parents: 9 diff changeset	49 VERSION 2.1.0 - 07/06/2015
8 8c5bb7b86df9 planemo upload lecorguille parents: diff changeset	50
8c5bb7b86df9 planemo upload lecorguille parents: diff changeset	51 - IMPROVEMENT: new datatype/dataset formats (rdata.camera.positive, rdata.camera.negative, rdata.camera.quick ...) will facilitate the sequence of tools and so avoid incompatibility errors.
8c5bb7b86df9 planemo upload lecorguille parents: diff changeset	52
8c5bb7b86df9 planemo upload lecorguille parents: diff changeset	53 - IMPROVEMENT: parameter labels have changed to facilitate their reading.
8c5bb7b86df9 planemo upload lecorguille parents: diff changeset	54
8c5bb7b86df9 planemo upload lecorguille parents: diff changeset	55 - UPDATE: merged with annotateDiffreport. Some parameters are dedicated to experiences with several conditions

Mercurial > repos > lecorguille > camera_annotate

annotate README.rst @ 14:225cb8347572 draft