Mercurial > repos > lecorguille > msnbase_readmsdata
changeset 16:12def6edac2f draft default tip
planemo upload for repository https://github.com/workflow4metabolomics/tools-metabolomics/ commit 03db090375a4ceb553dbf5ae77ef3866e98fbe9e
| author | workflow4metabolomics |
|---|---|
| date | Tue, 21 Nov 2023 09:44:25 +0000 |
| parents | 7faf9b2d83f6 |
| children | |
| files | msnbase_readmsdata.xml |
| diffstat | 1 files changed, 2 insertions(+), 6 deletions(-) [+] |
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--- a/msnbase_readmsdata.xml Mon Sep 11 09:24:51 2023 +0000 +++ b/msnbase_readmsdata.xml Tue Nov 21 09:44:25 2023 +0000 @@ -1,4 +1,4 @@ -<tool id="msnbase_readmsdata" name="MSnbase readMSData" version="@WRAPPER_VERSION@+galaxy1"> +<tool id="msnbase_readmsdata" name="MSnbase readMSData" version="@WRAPPER_VERSION@+galaxy2"> <description>Imports mass-spectrometry data files</description> <macros> @@ -34,14 +34,11 @@ <outputs> <data name="xsetRData" format="rdata.msnbase.raw" label="${input.name.rsplit('.',1)[0]}.raw.RData" from_work_dir="readmsdata.RData" /> - <data name="sampleMetadata" format="tabular" label="${input.name.rsplit('.',1)[0]}.sampleMetadata.tsv" from_work_dir="sampleMetadata.tsv" > - <filter>input.extension not in ["mzxml","mzml","mzdata","netcdf"]</filter> - </data> </outputs> <tests> - <test expect_num_outputs="2"> + <test expect_num_outputs="1"> <param name="input" value="faahKO_reduce.zip" ftype="zip" /> <assert_stdout> <has_text text="rowNames: faahKO_reduce/KO/ko15.CDF faahKO_reduce/KO/ko16.CDF" /> @@ -53,7 +50,6 @@ <has_text text="faahKO_reduce/WT/wt15.CDF wt15 WT" /> <has_text text="faahKO_reduce/WT/wt16.CDF wt16 WT" /> </assert_stdout> - <output name="sampleMetadata" value="sampleMetadata.tsv" /> </test> <test expect_num_outputs="1"> <param name="input" value="ko15.CDF" ftype="netcdf" />