Mercurial > repos > lecorguille > package_bioconductor_camera_1_22_0
changeset 0:fe68cf2289f1 draft default tip
planemo upload commit 540c20a51d84a78bdb9e0fe9e4441cdef7ef4ff7
| author | lecorguille |
|---|---|
| date | Mon, 25 Apr 2016 10:58:33 -0400 |
| parents | |
| children | |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 113 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Mon Apr 25 10:58:33 2016 -0400 @@ -0,0 +1,113 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="R" version="3.1.2"> + <repository changeset_revision="4d2fd1413b56" name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="netcdf" version="4.3.3.1"> + <repository changeset_revision="05471e262e39" name="package_netcdf_4_3_3_1" owner="lecorguille" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + + <package name="bioconductor-camera" version="1.26.0"> + <install version="1.0"> + <actions> + <action type="setup_r_environment"> + <repository changeset_revision="4d2fd1413b56" name="package_r_3_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="R" version="3.1.2" /> + </repository> + <repository changeset_revision="05471e262e39" 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RColorBrewer_1.1-2 +[22] reshape2_1.4.1 rpart_4.1-9 scales_0.2.4 +[25] splines_3.1.1 stats4_3.1.1 stringr_0.6.2 +[28] survival_2.38-1 tcltk_3.1.1 tools_3.1.1 --> + + + </action> + </actions> + </install> + <readme> +http://bioconductor.org/packages/release/bioc/html/CAMERA.html + +Annotation of peaklists generated by xcms, rule based annotation of isotopes and adducts, EIC correlation based tagging of unknown adducts and fragments + +Author: Carsten Kuhl, Ralf Tautenhahn, Steffen Neumann {ckuhl|sneumann}@ipb-halle.de, rtautenh@scripps.edu + +Galaxy integration: ABiMS TEAM - UPMC/CNRS - Station biologique de Roscoff - part of Workflow4Metabolomics.org [W4M] +Contact support@workflow4metabolomics.org for any questions or concerns about the Galaxy implementation of this tool. + +Thanks to https://testtoolshed.g2.bx.psu.edu/repository?repository_id=dd467491fd861a73 + </readme> + </package> +</tool_dependency>