Mercurial > repos > lecorguille > rdata_camera_datatypes
changeset 0:4a51ab3d8ecf draft default tip
planemo upload
| author | lecorguille |
|---|---|
| date | Fri, 07 Aug 2015 10:45:01 -0400 |
| parents | |
| children | |
| files | datatypes_conf.xml rdata_camera_datatype.py |
| diffstat | 2 files changed, 48 insertions(+), 0 deletions(-) [+] |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/datatypes_conf.xml Fri Aug 07 10:45:01 2015 -0400 @@ -0,0 +1,11 @@ +<?xml version="1.0"?> +<datatypes> + <datatype_files> + <datatype_file name="rdata_camera_datatype.py"/> + </datatype_files> + <registration> + <datatype extension="rdata.camera.positive" type="galaxy.datatypes.rdata_camera_datatype:RdataCameraPositive" mimetype="application/x-gzip" subclass="true" display_in_upload="true" /> + <datatype extension="rdata.camera.negative" type="galaxy.datatypes.rdata_camera_datatype:RdataCameraNegative" mimetype="application/x-gzip" subclass="true" display_in_upload="true" /> + <datatype extension="rdata.camera.quick" type="galaxy.datatypes.rdata_camera_datatype:RdataCameraQuick" mimetype="application/x-gzip" subclass="true" display_in_upload="true" /> + </registration> +</datatypes>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/rdata_camera_datatype.py Fri Aug 07 10:45:01 2015 -0400 @@ -0,0 +1,37 @@ +# -*- coding: utf-8 -*- +""" +xcms datatypes + +Author: lecorguille@sb-roscoff.fr +""" + +import logging +import os,os.path,re +from galaxy.datatypes.data import * +from galaxy.datatypes.sniff import * +from galaxy.datatypes.binary import * + +log = logging.getLogger(__name__) + + +class RdataCameraPositive( Binary ): + file_ext = "rdata.camera.positive" + blurb = "Output of CAMERA.annotate using positif acquisition mode\nInput of ProbMetab or CAMERA.combinexcAnnos" + + #TODO: sniff + + +class RdataCameraNegative( Binary ): + file_ext = "rdata.camera.negative" + blurb = "Output of CAMERA.annotate using negatif acquisition mode\nInput of ProbMetab or CAMERA.combinexcAnnos" + + #TODO: sniff + + +class RdataCameraQuick( Binary ): + file_ext = "rdata.camera.quick" + blurb = "Output of CAMERA.annotate using the quick mode" + + #TODO: sniff + +