annotate README.rst @ 11:de0d85537ee3 draft

planemo upload for repository https://github.com/workflow4metabolomics/xcms commit a6f5f18b3d6130f7d7fbb9f2df856838c6217797
author lecorguille
date Fri, 07 Apr 2017 07:37:05 -0400
parents ee29f0a6e361
children dcb9041cb9ea
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
3
5a54397dbc97 planemo upload
lecorguille
parents:
diff changeset
1
5a54397dbc97 planemo upload
lecorguille
parents:
diff changeset
2 Changelog/News
5a54397dbc97 planemo upload
lecorguille
parents:
diff changeset
3 --------------
5a54397dbc97 planemo upload
lecorguille
parents:
diff changeset
4
11
de0d85537ee3 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit a6f5f18b3d6130f7d7fbb9f2df856838c6217797
lecorguille
parents: 9
diff changeset
5 **Version 2.1.0 - 07/02/2017**
de0d85537ee3 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit a6f5f18b3d6130f7d7fbb9f2df856838c6217797
lecorguille
parents: 9
diff changeset
6
de0d85537ee3 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit a6f5f18b3d6130f7d7fbb9f2df856838c6217797
lecorguille
parents: 9
diff changeset
7 - IMPROVEMENT: change the management of the peaklist ids. The main ids remain the same as xcms generated. The export setiings now only add custom names in the variableMetadata tab (namecustom)
de0d85537ee3 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit a6f5f18b3d6130f7d7fbb9f2df856838c6217797
lecorguille
parents: 9
diff changeset
8
de0d85537ee3 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit a6f5f18b3d6130f7d7fbb9f2df856838c6217797
lecorguille
parents: 9
diff changeset
9 - IMPROVEMENT: xcms.fillpeaks can deal with merged individual data
de0d85537ee3 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit a6f5f18b3d6130f7d7fbb9f2df856838c6217797
lecorguille
parents: 9
diff changeset
10
9
ee29f0a6e361 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 08e7f269a5c59687a7768be8db5fcb4e4d736093
lecorguille
parents: 8
diff changeset
11 **Version 2.0.8 - 22/12/2016**
ee29f0a6e361 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 08e7f269a5c59687a7768be8db5fcb4e4d736093
lecorguille
parents: 8
diff changeset
12
ee29f0a6e361 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 08e7f269a5c59687a7768be8db5fcb4e4d736093
lecorguille
parents: 8
diff changeset
13 - IMPROVEMENT: Add an option to export the peak list at this step without have to wait camara.annotate
ee29f0a6e361 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 08e7f269a5c59687a7768be8db5fcb4e4d736093
lecorguille
parents: 8
diff changeset
14
8
cce30b3398e0 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit ec6f0c17bb277ea34f898d96d12d3357220f73d4
lecorguille
parents: 4
diff changeset
15 **Version 2.0.7 - 06/07/2016**
cce30b3398e0 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit ec6f0c17bb277ea34f898d96d12d3357220f73d4
lecorguille
parents: 4
diff changeset
16
cce30b3398e0 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit ec6f0c17bb277ea34f898d96d12d3357220f73d4
lecorguille
parents: 4
diff changeset
17 - UPGRADE: upgrate the xcms version from 1.44.0 to 1.46.0
cce30b3398e0 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit ec6f0c17bb277ea34f898d96d12d3357220f73d4
lecorguille
parents: 4
diff changeset
18
4
2edfa5e1f719 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 83b80dcd96b379518c2e4ace992affc889d32ca6
lecorguille
parents: 3
diff changeset
19 **Version 2.0.6 - 04/04/2016**
2edfa5e1f719 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 83b80dcd96b379518c2e4ace992affc889d32ca6
lecorguille
parents: 3
diff changeset
20
2edfa5e1f719 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 83b80dcd96b379518c2e4ace992affc889d32ca6
lecorguille
parents: 3
diff changeset
21 - TEST: refactoring to pass planemo test using conda dependencies
2edfa5e1f719 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 83b80dcd96b379518c2e4ace992affc889d32ca6
lecorguille
parents: 3
diff changeset
22
2edfa5e1f719 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 83b80dcd96b379518c2e4ace992affc889d32ca6
lecorguille
parents: 3
diff changeset
23
3
5a54397dbc97 planemo upload
lecorguille
parents:
diff changeset
24 **Version 2.0.5 - 10/02/2016**
5a54397dbc97 planemo upload
lecorguille
parents:
diff changeset
25
5a54397dbc97 planemo upload
lecorguille
parents:
diff changeset
26 - BUGFIX: better management of errors. Datasets remained green although the process failed
5a54397dbc97 planemo upload
lecorguille
parents:
diff changeset
27
5a54397dbc97 planemo upload
lecorguille
parents:
diff changeset
28 - UPDATE: refactoring of internal management of inputs/outputs
5a54397dbc97 planemo upload
lecorguille
parents:
diff changeset
29
5a54397dbc97 planemo upload
lecorguille
parents:
diff changeset
30 - UPDATE: refactoring to feed the new report tool
5a54397dbc97 planemo upload
lecorguille
parents:
diff changeset
31
5a54397dbc97 planemo upload
lecorguille
parents:
diff changeset
32
5a54397dbc97 planemo upload
lecorguille
parents:
diff changeset
33 **Version 2.0.2 - 02/06/2015**
5a54397dbc97 planemo upload
lecorguille
parents:
diff changeset
34
5a54397dbc97 planemo upload
lecorguille
parents:
diff changeset
35 - IMPROVEMENT: new datatype/dataset formats (rdata.xcms.raw, rdata.xcms.group, rdata.xcms.retcor ...) will facilitate the sequence of tools and so avoid incompatibility errors.
5a54397dbc97 planemo upload
lecorguille
parents:
diff changeset
36
5a54397dbc97 planemo upload
lecorguille
parents:
diff changeset
37 - IMPROVEMENT: parameter labels have changed to facilitate their reading.