Mercurial > repos > lecorguille > xcms_fillpeaks
comparison planemo_test.sh @ 5:cd351af95d14 draft
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 727b4a74b8e424af622dc0e2b0c910cdd020cd29
author | lecorguille |
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date | Mon, 25 Apr 2016 11:15:12 -0400 |
parents | 2edfa5e1f719 |
children | 465623d2f6fa |
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4:2edfa5e1f719 | 5:cd351af95d14 |
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1 planemo conda_init | 1 # Example of planemo command to launch test |
2 planemo conda_install . | |
3 planemo test --install_galaxy --conda_dependency_resolution --galaxy_branch "dev" | |
4 | 2 |
5 #All 1 test(s) executed passed. | 3 # Note: --galaxy_branch "dev" is set to deal with zip file |
6 #abims_xcms_fillPeaks[0]: passed | |
7 | 4 |
8 | 5 |
6 # -- Use of installed package environments | |
7 # after having installing package on a local galaxy instance | |
9 source /w/galaxy/dev/shed_tools_tool_dependency_dir/R/3.1.2/iuc/package_r_3_1_2/1ca39eb16186/env.sh | 8 source /w/galaxy/dev/shed_tools_tool_dependency_dir/R/3.1.2/iuc/package_r_3_1_2/1ca39eb16186/env.sh |
10 source /w/galaxy/dev/shed_tools_tool_dependency_dir/bioconductor-xcms/1.44.0/lecorguille/package_bioconductor_xcms_1_44_0/0c38f7d43e08/env.sh | 9 source /w/galaxy/dev/shed_tools_tool_dependency_dir/bioconductor-xcms/1.44.0/lecorguille/package_bioconductor_xcms_1_44_0/0c38f7d43e08/env.sh |
11 planemo test --install_galaxy --galaxy_branch "dev" | 10 planemo test --install_galaxy --galaxy_branch "dev" |
12 | 11 |
13 #All 1 test(s) executed passed. | 12 #All 1 test(s) executed passed. |
14 #abims_xcms_fillPeaks[0]: passed | 13 #abims_xcms_fillPeaks[0]: passed |
15 | 14 |
16 | 15 |
16 # -- Use of conda dependencies | |
17 planemo conda_init --conda_prefix /tmp/mc | |
18 planemo conda_install --conda_prefix /tmp/mc . | |
19 planemo test --install_galaxy --conda_prefix /tmp/mc --conda_dependency_resolution --galaxy_branch "dev" | |
20 | |
21 #All 1 test(s) executed passed. | |
22 #abims_xcms_fillPeaks[0]: passed | |
17 | 23 |
18 | 24 |
25 # -- Use of shed_test | |
19 planemo shed_test --install_galaxy --galaxy_branch "dev" -t testtoolshed | 26 planemo shed_test --install_galaxy --galaxy_branch "dev" -t testtoolshed |
20 #All 1 test(s) executed passed. | 27 #All 1 test(s) executed passed. |
21 #testtoolshed.g2.bx.psu.edu/repos/lecorguille/xcms_fillpeaks/abims_xcms_fillPeaks/2.0.6[0]: passed | 28 #testtoolshed.g2.bx.psu.edu/repos/lecorguille/xcms_fillpeaks/abims_xcms_fillPeaks/2.0.6[0]: passed |