Mercurial > repos > lecorguille > xcms_fillpeaks

comparison planemo_test.sh @ 5:cd351af95d14 draft

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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 727b4a74b8e424af622dc0e2b0c910cdd020cd29
author lecorguille
date Mon, 25 Apr 2016 11:15:12 -0400
parents 2edfa5e1f719
children 465623d2f6fa
comparison
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4:2edfa5e1f719 5:cd351af95d14
1 planemo conda_init 1 # Example of planemo command to launch test
2 planemo conda_install .
3 planemo test --install_galaxy --conda_dependency_resolution --galaxy_branch "dev"
4 2
5 #All 1 test(s) executed passed. 3 # Note: --galaxy_branch "dev" is set to deal with zip file
6 #abims_xcms_fillPeaks[0]: passed
7 4
8 5
6 # -- Use of installed package environments
7 # after having installing package on a local galaxy instance
9 source /w/galaxy/dev/shed_tools_tool_dependency_dir/R/3.1.2/iuc/package_r_3_1_2/1ca39eb16186/env.sh 8 source /w/galaxy/dev/shed_tools_tool_dependency_dir/R/3.1.2/iuc/package_r_3_1_2/1ca39eb16186/env.sh
10 source /w/galaxy/dev/shed_tools_tool_dependency_dir/bioconductor-xcms/1.44.0/lecorguille/package_bioconductor_xcms_1_44_0/0c38f7d43e08/env.sh 9 source /w/galaxy/dev/shed_tools_tool_dependency_dir/bioconductor-xcms/1.44.0/lecorguille/package_bioconductor_xcms_1_44_0/0c38f7d43e08/env.sh
11 planemo test --install_galaxy --galaxy_branch "dev" 10 planemo test --install_galaxy --galaxy_branch "dev"
12 11
13 #All 1 test(s) executed passed. 12 #All 1 test(s) executed passed.
14 #abims_xcms_fillPeaks[0]: passed 13 #abims_xcms_fillPeaks[0]: passed
15 14
16 15
16 # -- Use of conda dependencies
17 planemo conda_init --conda_prefix /tmp/mc
18 planemo conda_install --conda_prefix /tmp/mc .
19 planemo test --install_galaxy --conda_prefix /tmp/mc --conda_dependency_resolution --galaxy_branch "dev"
20
21 #All 1 test(s) executed passed.
22 #abims_xcms_fillPeaks[0]: passed
17 23
18 24
25 # -- Use of shed_test
19 planemo shed_test --install_galaxy --galaxy_branch "dev" -t testtoolshed 26 planemo shed_test --install_galaxy --galaxy_branch "dev" -t testtoolshed
20 #All 1 test(s) executed passed. 27 #All 1 test(s) executed passed.
21 #testtoolshed.g2.bx.psu.edu/repos/lecorguille/xcms_fillpeaks/abims_xcms_fillPeaks/2.0.6[0]: passed 28 #testtoolshed.g2.bx.psu.edu/repos/lecorguille/xcms_fillpeaks/abims_xcms_fillPeaks/2.0.6[0]: passed