Mercurial > repos > lecorguille > xcms_fillpeaks
view planemo_test.sh @ 5:cd351af95d14 draft
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 727b4a74b8e424af622dc0e2b0c910cdd020cd29
author | lecorguille |
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date | Mon, 25 Apr 2016 11:15:12 -0400 |
parents | 2edfa5e1f719 |
children | 465623d2f6fa |
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# Example of planemo command to launch test # Note: --galaxy_branch "dev" is set to deal with zip file # -- Use of installed package environments # after having installing package on a local galaxy instance source /w/galaxy/dev/shed_tools_tool_dependency_dir/R/3.1.2/iuc/package_r_3_1_2/1ca39eb16186/env.sh source /w/galaxy/dev/shed_tools_tool_dependency_dir/bioconductor-xcms/1.44.0/lecorguille/package_bioconductor_xcms_1_44_0/0c38f7d43e08/env.sh planemo test --install_galaxy --galaxy_branch "dev" #All 1 test(s) executed passed. #abims_xcms_fillPeaks[0]: passed # -- Use of conda dependencies planemo conda_init --conda_prefix /tmp/mc planemo conda_install --conda_prefix /tmp/mc . planemo test --install_galaxy --conda_prefix /tmp/mc --conda_dependency_resolution --galaxy_branch "dev" #All 1 test(s) executed passed. #abims_xcms_fillPeaks[0]: passed # -- Use of shed_test planemo shed_test --install_galaxy --galaxy_branch "dev" -t testtoolshed #All 1 test(s) executed passed. #testtoolshed.g2.bx.psu.edu/repos/lecorguille/xcms_fillpeaks/abims_xcms_fillPeaks/2.0.6[0]: passed