Mercurial > repos > lecorguille > xcms_fillpeaks

changeset 10:6caa60dcc217 draft

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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 30bf079aba283d5b37a77cbd8996592ad99eca8c
author lecorguille
date Tue, 07 Feb 2017 04:05:02 -0500
parents ee29f0a6e361
children de0d85537ee3
files xcms.r
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/xcms.r	Mon Jan 30 08:53:48 2017 -0500
+++ b/xcms.r	Tue Feb 07 04:05:02 2017 -0500
@@ -246,7 +246,7 @@
   getBPCs(xcmsSet=xset,rt="corrected",pdfname=bicspdf)
 }
 
-if (thefunction == "fillPeaks") {
+if (thefunction == "fillPeaks" && exists("intval")) {
   cat("\t\tGET THE PEAK LIST\n")
   getPeaklistW4M(xset,intval,convertRTMinute,numDigitsMZ,numDigitsRT,variableMetadataOutput,dataMatrixOutput)
 }