Mercurial > repos > lecorguille > xcms_group

comparison planemo_test.sh @ 5:0306a96cc446 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 727b4a74b8e424af622dc0e2b0c910cdd020cd29
author lecorguille
date Mon, 25 Apr 2016 11:14:27 -0400
parents 2db1d1d0f131
children
comparison
equal deleted inserted replaced
4:2db1d1d0f131 5:0306a96cc446
1 planemo conda_init 1 # Example of planemo command to launch test
2 planemo conda_install .
3 planemo test --install_galaxy --conda_dependency_resolution
4
5 #All 2 test(s) executed passed.
6 #abims_xcms_group[0]: passed
7 #abims_xcms_group[1]: passed
8 2
9 3
4 # -- Use of installed package environments
5 # after having installing package on a local galaxy instance
10 source /w/galaxy/dev/shed_tools_tool_dependency_dir/R/3.1.2/iuc/package_r_3_1_2/1ca39eb16186/env.sh 6 source /w/galaxy/dev/shed_tools_tool_dependency_dir/R/3.1.2/iuc/package_r_3_1_2/1ca39eb16186/env.sh
11 source /w/galaxy/dev/shed_tools_tool_dependency_dir/bioconductor-xcms/1.44.0/lecorguille/package_bioconductor_xcms_1_44_0/0c38f7d43e08/env.sh 7 source /w/galaxy/dev/shed_tools_tool_dependency_dir/bioconductor-xcms/1.44.0/lecorguille/package_bioconductor_xcms_1_44_0/0c38f7d43e08/env.sh
12 planemo test --install_galaxy 8 planemo test --install_galaxy
13 9
14 #All 2 test(s) executed passed. 10 #All 2 test(s) executed passed.
15 #abims_xcms_group[0]: passed 11 #abims_xcms_group[0]: passed
16 #abims_xcms_group[1]: passed 12 #abims_xcms_group[1]: passed
17 13
18 14
15 # -- Use of conda dependencies
16 planemo conda_init --conda_prefix /tmp/mc
17 planemo conda_install --conda_prefix /tmp/mc .
18 planemo test --install_galaxy --conda_prefix /tmp/mc --conda_dependency_resolution
19
20 #All 2 test(s) executed passed.
21 #abims_xcms_group[0]: passed
22 #abims_xcms_group[1]: passed
23
24
25 # -- Use of shed_test
19 planemo shed_test --install_galaxy -t testtoolshed 26 planemo shed_test --install_galaxy -t testtoolshed
20 27
21 #All 2 test(s) executed passed. 28 #All 2 test(s) executed passed.
22 #testtoolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/abims_xcms_group/2.0.5[0]: passed 29 #testtoolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/abims_xcms_group/2.0.5[0]: passed
23 #testtoolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/abims_xcms_group/2.0.5[1]: passed 30 #testtoolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/abims_xcms_group/2.0.5[1]: passed