Mercurial > repos > lecorguille > xcms_group
diff planemo_test.sh @ 5:0306a96cc446 draft
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 727b4a74b8e424af622dc0e2b0c910cdd020cd29
| author | lecorguille |
|---|---|
| date | Mon, 25 Apr 2016 11:14:27 -0400 |
| parents | 2db1d1d0f131 |
| children |
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--- a/planemo_test.sh Fri Apr 08 10:39:09 2016 -0400 +++ b/planemo_test.sh Mon Apr 25 11:14:27 2016 -0400 @@ -1,12 +1,8 @@ -planemo conda_init -planemo conda_install . -planemo test --install_galaxy --conda_dependency_resolution - -#All 2 test(s) executed passed. -#abims_xcms_group[0]: passed -#abims_xcms_group[1]: passed +# Example of planemo command to launch test +# -- Use of installed package environments +# after having installing package on a local galaxy instance source /w/galaxy/dev/shed_tools_tool_dependency_dir/R/3.1.2/iuc/package_r_3_1_2/1ca39eb16186/env.sh source /w/galaxy/dev/shed_tools_tool_dependency_dir/bioconductor-xcms/1.44.0/lecorguille/package_bioconductor_xcms_1_44_0/0c38f7d43e08/env.sh planemo test --install_galaxy @@ -16,6 +12,17 @@ #abims_xcms_group[1]: passed +# -- Use of conda dependencies +planemo conda_init --conda_prefix /tmp/mc +planemo conda_install --conda_prefix /tmp/mc . +planemo test --install_galaxy --conda_prefix /tmp/mc --conda_dependency_resolution + +#All 2 test(s) executed passed. +#abims_xcms_group[0]: passed +#abims_xcms_group[1]: passed + + +# -- Use of shed_test planemo shed_test --install_galaxy -t testtoolshed #All 2 test(s) executed passed.