Mercurial > repos > lecorguille > xcms_merge
changeset 6:ca6e35ab3487 draft
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 878be1bfbe93af0a140df76fa47f0a82a48189e3
| author | lecorguille |
|---|---|
| date | Tue, 09 Oct 2018 04:38:19 -0400 |
| parents | 7bb43bf0b546 |
| children | a9d451591d7b |
| files | macros_xcms.xml |
| diffstat | 1 files changed, 14 insertions(+), 3 deletions(-) [+] |
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--- a/macros_xcms.xml Thu Oct 04 10:36:22 2018 -0400 +++ b/macros_xcms.xml Tue Oct 09 04:38:19 2018 -0400 @@ -90,9 +90,6 @@ </token> <xml name="input_peaklist"> - <conditional name="peaklist"> - <param name="peaklistBool" type="boolean" label="Get a Peak List" /> - <when value="true"> <param name="convertRTMinute" type="boolean" checked="false" truevalue="TRUE" falsevalue="FALSE" label="Convert retention time (seconds) into minutes" help="Convert the columns rtmed, rtmin and rtmax into minutes"/> <param name="numDigitsMZ" type="integer" value="4" label="Number of decimal places for mass values reported in ions' identifiers." help="A minimum of 4 decimal places is recommended. Useful to avoid duplicates within identifiers" /> <param name="numDigitsRT" type="integer" value="0" label="Number of decimal places for retention time values reported in ions' identifiers." help="Useful to avoid duplicates within identifiers" /> @@ -102,6 +99,20 @@ <option value="intb">intb</option> </param> <param name="naTOzero" type="boolean" checked="true" truevalue="TRUE" falsevalue="FALSE" label="Replace the remain NA by 0 in the dataMatrix" help="Rather mandatory for some downstream statistical steps"/> + </xml> + + <xml name="input_peaklist_section"> + <section name="peaklist" title="Peak List" expanded="True"> + <param name="peaklistBool" type="hidden" label="Get the Peak List" value="True" /> + <expand macro="input_peaklist"/> + </section> + </xml> + + <xml name="input_peaklist_conditional"> + <conditional name="peaklist"> + <param name="peaklistBool" type="boolean" label="Get the Peak List" /> + <when value="true"> + <expand macro="input_peaklist"/> </when> <when value="false" /> </conditional>