Mercurial > repos > lecorguille > xcms_retcor
comparison abims_xcms_retcor.xml @ 3:3b44991a8e05 draft
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 727b4a74b8e424af622dc0e2b0c910cdd020cd29
| author | lecorguille |
|---|---|
| date | Mon, 25 Apr 2016 11:14:51 -0400 |
| parents | 54cc3edfe35c |
| children | ac93ed26e4e1 |
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| 2:54cc3edfe35c | 3:3b44991a8e05 |
|---|---|
| 97 <data name="bpcsCorPdf" format="pdf" label="${image.name[:-6]}.retcor.BPCs_corrected.pdf" /> | 97 <data name="bpcsCorPdf" format="pdf" label="${image.name[:-6]}.retcor.BPCs_corrected.pdf" /> |
| 98 <data name="log" format="txt" label="xset.log.txt" hidden="true" /> | 98 <data name="log" format="txt" label="xset.log.txt" hidden="true" /> |
| 99 </outputs> | 99 </outputs> |
| 100 | 100 |
| 101 <tests> | 101 <tests> |
| 102 <test> | 102 <!--<test> |
| 103 <param name="image" value="xset.group.RData"/> | 103 <param name="image" value="xset.group.RData"/> |
| 104 <param name="methods|method" value="peakgroups"/> | 104 <param name="methods|method" value="peakgroups"/> |
| 105 <param name="methods|smooth" value="loess"/> | 105 <param name="methods|smooth" value="loess"/> |
| 106 <param name="methods|extra" value="1"/> | 106 <param name="methods|extra" value="1"/> |
| 107 <param name="methods|missing" value="1"/> | 107 <param name="methods|missing" value="1"/> |
| 118 <has_text text="Peaks: 59359 (about 14840 per sample)" /> | 118 <has_text text="Peaks: 59359 (about 14840 per sample)" /> |
| 119 <has_text text="Peak Groups: 0" /> | 119 <has_text text="Peak Groups: 0" /> |
| 120 <has_text text="Sample classes: bio, blank" /> | 120 <has_text text="Sample classes: bio, blank" /> |
| 121 </assert_contents> | 121 </assert_contents> |
| 122 </output> | 122 </output> |
| 123 </test>--> | |
| 124 <test> | |
| 125 <param name="image" value="faahKO.xset.group.RData"/> | |
| 126 <param name="methods|method" value="peakgroups"/> | |
| 127 <param name="methods|smooth" value="loess"/> | |
| 128 <param name="methods|extra" value="1"/> | |
| 129 <param name="methods|missing" value="1"/> | |
| 130 <param name="methods|options|option" value="show"/> | |
| 131 <param name="methods|options|span" value="0.2"/> | |
| 132 <param name="methods|options|family" value="gaussian"/> | |
| 133 <param name="methods|options|plottype" value="deviation"/> | |
| 134 <param name="zip_file" value="faahKO_reduce.zip" ftype="zip" /> | |
| 135 <output name="log"> | |
| 136 <assert_contents> | |
| 137 <has_text text="object with 4 samples" /> | |
| 138 <has_text text="Time range: 2507.7-4481.7 seconds (41.8-74.7 minutes)" /> | |
| 139 <has_text text="Mass range: 200.1-600 m/z" /> | |
| 140 <has_text text="Peaks: 9251 (about 2313 per sample)" /> | |
| 141 <has_text text="Peak Groups: 0" /> | |
| 142 <has_text text="Sample classes: KO, WT" /> | |
| 143 </assert_contents> | |
| 144 </output> | |
| 123 </test> | 145 </test> |
| 124 </tests> | 146 </tests> |
| 125 | 147 |
| 126 <help><![CDATA[ | 148 <help><![CDATA[ |
| 127 | 149 |