diff abims_xcms_retcor.xml @ 3:3b44991a8e05 draft

planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 727b4a74b8e424af622dc0e2b0c910cdd020cd29

--- a/abims_xcms_retcor.xml	Fri Apr 08 10:39:32 2016 -0400
+++ b/abims_xcms_retcor.xml	Mon Apr 25 11:14:51 2016 -0400
@@ -99,7 +99,7 @@
     </outputs>
     
     <tests>
-        <test>
+        <!--<test>
             <param name="image" value="xset.group.RData"/>
             <param name="methods|method" value="peakgroups"/>
             <param name="methods|smooth" value="loess"/>
@@ -120,6 +120,28 @@
                     <has_text text="Sample classes: bio, blank" />
                 </assert_contents>
             </output>
+        </test>-->
+        <test>
+            <param name="image" value="faahKO.xset.group.RData"/>
+            <param name="methods|method" value="peakgroups"/>
+            <param name="methods|smooth" value="loess"/>
+            <param name="methods|extra" value="1"/>
+            <param name="methods|missing" value="1"/>
+            <param name="methods|options|option" value="show"/>
+            <param name="methods|options|span" value="0.2"/>
+            <param name="methods|options|family" value="gaussian"/>
+            <param name="methods|options|plottype" value="deviation"/>
+            <param name="zip_file" value="faahKO_reduce.zip"  ftype="zip" />
+            <output name="log">
+                <assert_contents>
+                    <has_text text="object with 4 samples" />
+                    <has_text text="Time range: 2507.7-4481.7 seconds (41.8-74.7 minutes)" />
+                    <has_text text="Mass range: 200.1-600 m/z" />
+                    <has_text text="Peaks: 9251 (about 2313 per sample)" />
+                    <has_text text="Peak Groups: 0" />
+                    <has_text text="Sample classes: KO, WT" />
+                </assert_contents>
+            </output>
         </test>
     </tests>