Mercurial > repos > lecorguille > xcms_xcmsset

changeset 14:363cce459fff draft

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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 73791d74546087b2a872d9279df960f5bc207298
author lecorguille
date Tue, 13 Feb 2018 04:47:50 -0500
parents c934dd5c49a9
children b62808a2a008
files destinations_input_type.py
diffstat 1 files changed, 8 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/destinations_input_type.py	Wed Nov 29 09:45:19 2017 -0500
+++ b/destinations_input_type.py	Tue Feb 13 04:47:50 2018 -0500
@@ -16,8 +16,11 @@
     inp_data = dict( [ ( da.name, da.dataset ) for da in job.input_datasets ] )
     inp_data.update( [ ( da.name, da.dataset ) for da in job.input_library_datasets ] )
     input_extension = inp_data[ "input" ].extension
-    log.debug("The input extension is %s" % input_extension)
-    if input_extension in ["mzxml","mzml","mzdata","netcdf"]:
-        return 'thread1-mem_free10'
-    else: # zip file
-        return 'thread4-men_free10'
+    if 'input' in inp_data:
+        input_extension = inp_data[ "input" ].extension
+        log.debug("The input extension is %s" % input_extension)
+        if input_extension in ["mzxml","mzml","mzdata","netcdf"]:
+            return 'thread1-mem_free8'
+    # zip file
+    return 'thread9-mem_free8'
+