Mercurial > repos > lionelguy > package_hmmer_3_1

changeset 0:007c736bf7e8 draft default tip

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author lionelguy
date Wed, 04 Sep 2013 10:08:24 -0400
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 21 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed Sep 04 10:08:24 2013 -0400
@@ -0,0 +1,21 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="hmmer" version="3.1b1">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://selab.janelia.org/software/hmmer3/3.1b1/hmmer-3.1b1.tar.gz</action>
+                <!-- Make -->
+		<action type="shell_command">./configure --prefix=$INSTALL_DIR</action>
+		<action type="shell_command">make</action>
+		<action type="shell_command">make install</action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+This installs hmmer 3.1b1. See http://hmmer.janelia.org/ for more details.
+        </readme>
+    </package>
+</tool_dependency>
+