Mercurial > repos > lionelguy > prokka
changeset 3:5c289bf13a08 draft
Uploaded
| author | lionelguy |
|---|---|
| date | Thu, 05 Sep 2013 03:59:23 -0400 |
| parents | bb07951d72db |
| children | 563743fcaae1 |
| files | prokka.xml |
| diffstat | 1 files changed, 7 insertions(+), 3 deletions(-) [+] |
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--- a/prokka.xml Wed Sep 04 11:35:45 2013 -0400 +++ b/prokka.xml Thu Sep 05 03:59:23 2013 -0400 @@ -75,7 +75,7 @@ <param name="usegenus" type="boolean" truevalue="--usegenus" falsevalue="" checked="false" label="Use genus-specific BLAST databases" /> <param name="metagenome" type="boolean" truevalue="--metagenome" falsevalue="" checked="false" label="Improve gene predictions for highly fragmented genomes" /> <param name="fast" type="boolean" truevalue="--fast" falsevalue="" checked="false" label="Fast mode - skip CDS /product searching" /> - <param name="cpus" type="integer" value="0" min="0" label="Number of CPUs to use [0=all] " /> + <param name="cpus" type="integer" value="4" min="1" label="Number of CPUs to use " /> <param name="mincontig" type="integer" value="200" label="Minimum contig size [NCBI needs 200]" /> <param name="evalue" type="text" value="1e-06" label="Similarity e-value cut-off" /> <param name="rfam" type="boolean" truevalue="--rfam" falsevalue="" checked="false" label="Enable searching for ncRNAs with Infernal+Rfam (SLOW!)" /> @@ -95,11 +95,15 @@ <data name="out_err" format="txt" label="Errors" from_work_dir="outdir/prokka.err"/> </outputs> <stdio> - <!--<exit_code range="1:" level="fatal" description="Error" />--> + <exit_code range="1:" level="fatal" description="Error" /> <regex match="not a readable non-empty FASTA file" - source="stdout" + source="both" level="fatal" description="Input file not a readable non-empty FASTA file" /> + <regex match="Illegal division by zero" + source="both" + level="fatal" + description="Illegal division by zero" /> </stdio> <help>