comparison tool_dependencies.xml @ 0:c0ecd158e2a7 draft default tip

Initial public release of the seqprep wrapper, v0.1

0:c0ecd158e2a7

<?xml version="1.0"?>
<tool_dependency>
  <package name="SeqPrep" version="11301c4a5f3222bdb4d0ec30ae5e192e609c0154">
    <install version="1.0">
      <actions>
	<action type="shell_command">git clone --recursive git://github.com/jstjohn/SeqPrep.git</action>
	<action type="shell_command">git reset --hard 11301c4a5f3222bdb4d0ec30ae5e192e609c0154</action>
	<action type="shell_command">make</action>
	<action type="make_directory">$INSTALL_DIR/bin</action>	
	<action type="move_file">
	  <source>SeqPrep</source>
	  <destination>$INSTALL_DIR/bin</destination>
	</action>
	<action type="move_file">
	  <source>Test/seqlens.py</source>
	  <destination>$INSTALL_DIR/bin</destination>
	</action>
	<action type="chmod">
	  <file mode="750">$INSTALL_DIR/bin/seqlens.py</file>
	</action>
	<action type="set_environment">
	  <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
	</action>
      </actions>
    </install>
    <readme>
SeqPrep is copyrighted (2011) to John St. John. 
Downloading from https://github.com/jstjohn/SeqPrep
    </readme>
  </package>
</tool_dependency>