Mercurial > repos > lionelguy > seqprep
diff tool_dependencies.xml @ 0:c0ecd158e2a7 draft default tip
Initial public release of the seqprep wrapper, v0.1
| author | lionelguy |
|---|---|
| date | Wed, 23 Oct 2013 09:44:03 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Wed Oct 23 09:44:03 2013 -0400 @@ -0,0 +1,31 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="SeqPrep" version="11301c4a5f3222bdb4d0ec30ae5e192e609c0154"> + <install version="1.0"> + <actions> + <action type="shell_command">git clone --recursive git://github.com/jstjohn/SeqPrep.git</action> + <action type="shell_command">git reset --hard 11301c4a5f3222bdb4d0ec30ae5e192e609c0154</action> + <action type="shell_command">make</action> + <action type="make_directory">$INSTALL_DIR/bin</action> + <action type="move_file"> + <source>SeqPrep</source> + <destination>$INSTALL_DIR/bin</destination> + </action> + <action type="move_file"> + <source>Test/seqlens.py</source> + <destination>$INSTALL_DIR/bin</destination> + </action> + <action type="chmod"> + <file mode="750">$INSTALL_DIR/bin/seqlens.py</file> + </action> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> + </action> + </actions> + </install> + <readme> +SeqPrep is copyrighted (2011) to John St. John. +Downloading from https://github.com/jstjohn/SeqPrep + </readme> + </package> +</tool_dependency>