diff test-data/Text_output_for_topGO_analysis.txt @ 0:aade04e750fa draft default tip

planemo upload

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+++ b/test-data/Text_output_for_topGO_analysis.txt	Fri Sep 15 10:38:28 2017 -0400
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+GO.ID	Term	Annotated	Significant	Expected	pvalues	qvalues
+GO:0045087	innate immune response	1428	35	2.84	6.5e-27	9.28915e-24
+GO:0007268	synaptic transmission	766	20	1.52	7.2e-17	9.35410909090909e-14
+GO:0019933	cAMP-mediated signaling	56	9	0.11	1.2e-15	1.4291e-12
+GO:0050796	regulation of insulin secretion	208	13	0.41	2.6e-15	2.8582e-12
+GO:0007193	adenylate cyclase-inhibiting G-protein c...	75	9	0.15	1.9e-14	1.93949285714286e-11
+GO:1904322	cellular response to forskolin	5	5	0.01	2.3e-14	2.19128666666667e-11
+GO:0007189	adenylate cyclase-activating G-protein c...	84	9	0.17	5.5e-14	4.91253125e-11
+GO:0002223	stimulatory C-type lectin receptor signa...	139	10	0.28	1.1e-13	9.24711764705882e-11
+GO:0006171	cAMP biosynthetic process	139	13	0.28	1.2e-13	9.52733333333333e-11
+GO:0055085	transmembrane transport	1435	25	2.86	3.7e-13	2.78298421052632e-10
+GO:0007596	blood coagulation	590	21	1.17	9.7e-12	6.931135e-09
+GO:0048010	vascular endothelial growth factor recep...	317	11	0.63	1.6e-11	1.0888380952381e-08
+GO:0038095	Fc-epsilon receptor signaling pathway	316	10	0.63	3.9e-10	2.53340454545455e-07
+GO:0030168	platelet activation	263	11	0.52	6.2e-10	3.85235652173913e-07
+GO:2000480	negative regulation of cAMP-dependent pr...	8	4	0.02	9.2e-10	5.47821666666667e-07
+GO:0038096	Fc-gamma receptor signaling pathway invo...	74	6	0.15	6.7e-09	3.829988e-06
+GO:0010881	regulation of cardiac muscle contraction...	19	4	0.04	5.0e-08	2.74826923076923e-05
+GO:0051343	positive regulation of cyclic-nucleotide...	5	3	0.01	7.2e-08	3.81093333333333e-05
+GO:0010800	positive regulation of peptidyl-threonin...	26	4	0.05	1.9e-07	9.69746428571429e-05
+GO:1901841	regulation of high voltage-gated calcium...	8	3	0.02	4.0e-07	0.00019711724137931
+GO:0022400	regulation of rhodopsin mediated signali...	33	4	0.07	5.2e-07	0.00023972
+GO:0001975	response to amphetamine	33	4	0.07	5.2e-07	0.00023972
+GO:0060316	positive regulation of ryanodine-sensiti...	9	3	0.02	6.0e-07	0.000259836363636364
+GO:1901844	regulation of cell communication by elec...	9	3	0.02	6.0e-07	0.000259836363636364
+GO:0007190	activation of adenylate cyclase activity	35	4	0.07	6.6e-07	0.000277413529411765
+GO:0071361	cellular response to ethanol	11	3	0.02	1.2e-06	0.000476366666666667
+GO:0060315	negative regulation of ryanodine-sensiti...	11	3	0.02	1.2e-06	0.000476366666666667
+GO:0032465	regulation of cytokinesis	98	5	0.2	1.4e-06	0.00054074054054054
+GO:0010801	negative regulation of peptidyl-threonin...	13	3	0.03	2.0e-06	0.000752157894736842
+GO:0007611	learning or memory	229	11	0.46	2.1e-06	0.000769515384615385
+GO:0032516	positive regulation of phosphoprotein ph...	15	3	0.03	3.2e-06	0.00111539512195122
+GO:0005513	detection of calcium ion	15	3	0.03	3.2e-06	0.00111539512195122
+GO:0097338	response to clozapine	2	2	0	3.9e-06	0.00132702142857143
+GO:0051447	negative regulation of meiotic cell cycl...	19	3	0.04	6.9e-06	0.00229320697674419
+GO:0031954	positive regulation of protein autophosp...	20	3	0.04	8.1e-06	0.00263084318181818
+GO:0051000	positive regulation of nitric-oxide synt...	21	3	0.04	9.4e-06	0.00298523111111111
+GO:0000186	activation of MAPKK activity	258	6	0.51	1.1e-05	0.00341741304347826
+GO:0043647	inositol phosphate metabolic process	71	4	0.14	1.2e-05	0.00364876595744681
+GO:0051412	response to corticosterone	26	3	0.05	1.8e-05	0.00524975510204082
+GO:0007616	long-term memory	26	3	0.05	1.8e-05	0.00524975510204082
+GO:0005980	glycogen catabolic process	27	3	0.05	2.0e-05	0.0057164
+GO:0002576	platelet degranulation	89	4	0.18	2.9e-05	0.00812625490196078
+GO:0002027	regulation of heart rate	90	4	0.18	3.0e-05	0.00824480769230769
+GO:0046209	nitric oxide metabolic process	94	4	0.19	3.5e-05	0.00943745283018868
+GO:0046777	protein autophosphorylation	231	8	0.46	3.8e-05	0.0100566296296296
+GO:0035556	intracellular signal transduction	2849	30	5.67	4.1e-05	0.0106532909090909
+GO:0018107	peptidyl-threonine phosphorylation	78	8	0.16	4.3e-05	0.0109734464285714
+GO:0019433	triglyceride catabolic process	35	3	0.07	4.5e-05	0.0112823684210526
+GO:0048016	inositol phosphate-mediated signaling	36	3	0.07	4.9e-05	0.0120734310344828
+GO:1901621	negative regulation of smoothened signal...	6	2	0.01	5.7e-05	0.0138065593220339
+GO:0050730	regulation of peptidyl-tyrosine phosphor...	214	5	0.43	6.2e-05	0.0147673666666667
+GO:0042045	epithelial fluid transport	7	2	0.01	8.0e-05	0.0187422950819672
+GO:0044281	small molecule metabolic process	2690	28	5.35	8.4e-05	0.019362
+GO:0018105	peptidyl-serine phosphorylation	237	5	0.47	0.00010	0.022684126984127
+GO:0021762	substantia nigra development	47	3	0.09	0.00011	0.02456265625
+GO:0034351	negative regulation of glial cell apopto...	9	2	0.02	0.00014	0.0307806153846154
+GO:0007411	axon guidance	600	7	1.19	0.00015	0.0324795454545454
+GO:0090330	regulation of platelet aggregation	13	2	0.03	0.00030	0.063989552238806
+GO:0008286	insulin receptor signaling pathway	361	7	0.72	0.00036	0.0745617391304348
+GO:0070588	calcium ion transmembrane transport	205	7	0.41	0.00036	0.0745617391304348
+GO:0071902	positive regulation of protein serine/th...	316	5	0.63	0.00038	0.0775797142857143
+GO:0046827	positive regulation of protein export fr...	15	2	0.03	0.00040	0.080512676056338
+GO:0071380	cellular response to prostaglandin E sti...	17	2	0.03	0.00051	0.0998412328767123
+GO:0035413	positive regulation of catenin import in...	17	2	0.03	0.00051	0.0998412328767123
+GO:0045787	positive regulation of cell cycle	340	5	0.68	0.00053	0.102354459459459
+GO:0006094	gluconeogenesis	84	3	0.17	0.00062	0.118138933333333
+GO:0051592	response to calcium ion	114	6	0.23	0.00077	0.144790394736842
+GO:0043536	positive regulation of blood vessel endo...	22	2	0.04	0.00087	0.16146974025974
+GO:0071364	cellular response to epidermal growth fa...	23	2	0.05	0.00095	0.174057051282051
+GO:0042752	regulation of circadian rhythm	98	3	0.2	0.00097	0.175471772151899